Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060645.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    76   2e-14
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    42   5e-04
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    40   0.002
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    40   0.002
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    39   0.003
At5g18300.1 68418.m02152 no apical meristem (NAM) family protein...    28   6.7  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    28   6.7  
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.7  
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ...    28   6.7  
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f...    27   8.8  
At3g52670.1 68416.m05802 F-box family protein contains F-box dom...    27   8.8  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    27   8.8  

>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 31/53 (58%), Positives = 39/53 (73%), Gaps = 5/53 (9%)
 Frame = +1

Query: 502 KDLFD-----DKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           KDL+D     D DGG WKQGW + Y +++W +K KLK+F+VPHSHNDPGW  T
Sbjct: 119 KDLYDRIEFLDTDGGPWKQGWRVTYKDDEW-EKEKLKIFVVPHSHNDPGWKLT 170


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +1

Query: 526 GGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQS 678
           GGV  +   IEYN        K+ V +VPHSH+D GWLKT       +N S
Sbjct: 18  GGVTSE--YIEYNTKPRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNS 66


>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 559 YNENQWSQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQS 678
           YN +      KL V +VPHSH+D GWLKT       +N S
Sbjct: 26  YNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNS 65


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 559 YNENQWSQKNKLKVFIVPHSHNDPGWLKTFXNLLPITNQS 678
           YN +      KL V +VPHSH+D GWLKT       +N S
Sbjct: 26  YNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNS 65


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 538 KQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           K G  ++Y         KL V +VPHSH+D GWLKT
Sbjct: 29  KGGGYVKYGTEAKVVPGKLNVHLVPHSHDDVGWLKT 64


>At5g18300.1 68418.m02152 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           NAC-domain protein TERN, Nicotiana tabacum,
           EMBL:AB021178
          Length = 147

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 508 LFDDKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDPGWLKT 645
           L +D+D    K+ W + + EN   + N+   F+   +    GW  T
Sbjct: 46  LLEDRDNIYAKEPWRLNHTENDIFEPNEWFYFVKRTNRKVKGWKAT 91


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 260 DQHHAVVGEIKSAMSQIIEQSNEYHPPQKRPRQMQKNKKIREFKVVRDEP 409
           D  H  +   K+ MS++ E++ +     +R     K+ K+R F +++ EP
Sbjct: 30  DGDHQELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIIQQEP 79


>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Drosophila melanogaster
           [GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 288

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 120 CIIAFIFILYVMTDLSFNLPSVKPAINI 203
           C + F+F  Y  T LS N+P VKP + +
Sbjct: 22  CSLCFLFGFYGSTLLSQNVPRVKPRLRM 49


>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
           GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 802

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 284 EIKSAMSQIIEQSN--EYHPPQKRPRQMQKNKKIREFKVVRDEPP 412
           E K A+ + ++ +N  E H      +Q+QK KK+++     +E P
Sbjct: 459 EAKRALKEALKMTNRVELHDAVSHLKQLQKKKKVKKGNSANEEGP 503


>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
           family;
          Length = 648

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 CIIAFIFILYVMTDLSFNLPSVKP 191
           C IA IF+L++    SF LP V P
Sbjct: 18  CAIALIFLLFIHGAHSFYLPGVAP 41


>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 384

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 671 LVIGNKXSNVFNQPGSLCECGTIKTFNLFF*LH 573
           LV+       F  P SLC C T++T  L   +H
Sbjct: 81  LVLYVAPKQTFTFPSSLCICNTLETLKLILGIH 113


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 257 LDQHHAVVGEIKSAMSQIIEQSNEYHPPQKRPRQMQKNKKIREFKVVRDEPPRM 418
           LD  H V G+I      +   +  Y  P+ RP +  + K         D+PP++
Sbjct: 119 LDGKHTVFGQIAEGFDTLTRINEAYVDPKNRPYKNIRIKHTHILDDPFDDPPQL 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,758
Number of Sequences: 28952
Number of extensions: 274969
Number of successful extensions: 817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)