Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060643.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.58 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.1  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   4.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.5  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 555 CGDCGESNKSGDCDNTHSTDKVDYKRETLGKFHSS 451
           CG   E  +  DCD++ S  +V Y R  LG+  S+
Sbjct: 413 CGSLREIKEVSDCDSSESRKEV-YVRVPLGQRFSN 446


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 363 DPHFQWCHLLDLTTDRHC 310
           DP   +C  L++T   HC
Sbjct: 60  DPSADYCLFLEMTLAHHC 77


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 279 TYHVHGQVNISNDDPLLSQ 335
           ++H H  V+ +N +PLLS+
Sbjct: 56  SFHDHVSVSNTNTEPLLSE 74


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 302 NLTVHVIRDTLTMVRAVNGS 243
           NL +HV +DT T+   + G+
Sbjct: 592 NLEIHVTKDTDTLDNEMRGA 611


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/35 (22%), Positives = 13/35 (37%)
 Frame = -3

Query: 450 VVTQDLNLAAEPSAQLSPTQCYSGTAEKHDPHFQW 346
           ++ +D+N A      +     Y    E   PH  W
Sbjct: 1   MIDKDMNSACMRGGSVRTLNNYQQVMEPRSPHTAW 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,633
Number of Sequences: 336
Number of extensions: 1636
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)