Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060643.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 31 0.66
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.5
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.5
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_36728| Best HMM Match : ArsD (HMM E-Value=1.6) 29 2.7
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 29 2.7
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) 28 8.1
SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6) 28 8.1
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 28 8.1
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 34.7 bits (76), Expect = 0.071
Identities = 10/39 (25%), Positives = 32/39 (82%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y +S+ P++F+ S+P++++ +P++++ S+P++++ S+
Sbjct: 592 MYELSK-PSIFELSKPSIYELLEPSIYELSKPSIYELSK 629
Score = 34.3 bits (75), Expect = 0.094
Identities = 10/39 (25%), Positives = 32/39 (82%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y++ + P++++ S+P++++ S+P++ + S+P++F+ S+
Sbjct: 488 IYDVGK-PSIYELSKPSIYELSKPSIHELSKPSIFELSK 525
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/39 (28%), Positives = 31/39 (79%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y +S+ P++++ S+P++ + S+P++F+ S+P +++ S+
Sbjct: 496 IYELSK-PSIYELSKPSIHELSKPSIFELSKPFIYEVSK 533
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/36 (27%), Positives = 30/36 (83%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
+Y +S+ P++++ S+P +++ S+P++F+ S+P++++
Sbjct: 576 IYELSK-PSIYELSKPFMYELSKPSIFELSKPSIYE 610
Score = 32.7 bits (71), Expect = 0.29
Identities = 10/36 (27%), Positives = 29/36 (80%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
+Y +S+ P++ + S+P++F+ S+P +++ S+P++++
Sbjct: 504 IYELSK-PSIHELSKPSIFELSKPFIYEVSKPSIYE 538
Score = 32.7 bits (71), Expect = 0.29
Identities = 10/39 (25%), Positives = 31/39 (79%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y +S+ P +++ S+P++F+ S+P++++ +P++++ S+
Sbjct: 584 IYELSK-PFMYELSKPSIFELSKPSIYELLEPSIYELSK 621
Score = 32.7 bits (71), Expect = 0.29
Identities = 8/29 (27%), Positives = 25/29 (86%)
Frame = +3
Query: 75 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
P++++ S+P++++ S+P++++ S+P ++K
Sbjct: 614 PSIYELSKPSIYELSKPSIYELSKPPIYK 642
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/39 (28%), Positives = 28/39 (71%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
L N R P+V++ S+P++++ S+P ++ +P++++ S+
Sbjct: 463 LENGFRQPSVYEVSKPSIYEISKPYIYDVGKPSIYELSK 501
Score = 32.3 bits (70), Expect = 0.38
Identities = 9/32 (28%), Positives = 27/32 (84%)
Frame = +3
Query: 75 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
P++++ S+P++++ S+P +++ S+P++F+ S+
Sbjct: 574 PSIYELSKPSIYELSKPFMYELSKPSIFELSK 605
Score = 31.9 bits (69), Expect = 0.50
Identities = 8/39 (20%), Positives = 32/39 (82%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
++ +S+ P++++ +P++++ S+P++++ S+P++++ S+
Sbjct: 600 IFELSK-PSIYELLEPSIYELSKPSIYELSKPSIYELSK 637
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/39 (23%), Positives = 30/39 (76%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y +S+ P++++ S+P ++ +P++++ S+P++++ S+
Sbjct: 472 VYEVSK-PSIYEISKPYIYDVGKPSIYELSKPSIYELSK 509
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/39 (23%), Positives = 31/39 (79%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
++ +S+ P++F+ S+P +++ S+P++++ +P++++ S+
Sbjct: 512 IHELSK-PSIFELSKPFIYEVSKPSIYELLEPSIYELSK 549
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/39 (23%), Positives = 31/39 (79%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y +S+ P++++ +P++++ S+P++++ S+P +++ S+
Sbjct: 560 IYELSK-PSIYELLEPSIYELSKPSIYELSKPFMYELSK 597
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
+Y +S+ P++++ S+P++++ S+P ++K +P +++
Sbjct: 616 IYELSK-PSIYELSKPSIYELSKPPIYKLIKPFIYE 650
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/38 (28%), Positives = 29/38 (76%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQS 167
+Y +S+ P+VF+ +P++ + S+P++F+ S+P +++ +
Sbjct: 672 IYELSK-PSVFELIKPSINELSKPSIFELSKPFIYEDA 708
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/39 (25%), Positives = 29/39 (74%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
+Y IS+ P ++ +P++++ S+P++++ S+P++ + S+
Sbjct: 480 IYEISK-PYIYDVGKPSIYELSKPSIYELSKPSIHELSK 517
Score = 31.1 bits (67), Expect = 0.87
Identities = 7/32 (21%), Positives = 27/32 (84%)
Frame = +3
Query: 75 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
P++++ S+P++++ +P++++ S+P++++ S+
Sbjct: 558 PSIYELSKPSIYELLEPSIYELSKPSIYELSK 589
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/32 (31%), Positives = 26/32 (81%)
Frame = +3
Query: 75 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 170
P++++ S+P+VF+ +P++ + S+P++F+ S+
Sbjct: 670 PSIYELSKPSVFELIKPSINELSKPSIFELSK 701
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
+Y + + P +++ S+P++++ +P++++ S+P+VF+
Sbjct: 648 IYEVIK-PFIYEVSKPSIYELLEPSIYELSKPSVFE 682
Score = 29.5 bits (63), Expect = 2.7
Identities = 7/36 (19%), Positives = 29/36 (80%)
Frame = +3
Query: 54 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
++ +S+ P +++ S+P++++ +P++++ S+P++++
Sbjct: 520 IFELSK-PFIYEVSKPSIYELLEPSIYELSKPSIYE 554
Score = 29.5 bits (63), Expect = 2.7
Identities = 6/29 (20%), Positives = 25/29 (86%)
Frame = +3
Query: 75 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
P++++ S+P++++ +P++++ S+P++++
Sbjct: 542 PSIYELSKPSIYELIKPSIYELSKPSIYE 570
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -3
Query: 537 SNKSGDCDNTHSTDKVDYKRETLGKFHSSVVTQDLNLAAEPSAQLSPTQCYSGTAEKHD 361
S + GD + +S YKR+ + K + + L E SA+ T Y KHD
Sbjct: 604 SRRDGDSSSAYSDGARKYKRDPVEKLRAELQRLGAQLQEEASARTMQTHMYDDLRRKHD 662
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGLRE 65
DC V DC V DC K V DC K LR+
Sbjct: 225 DCCKEVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 258
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGLRE 65
DC V DC V DC K V DC K LR+
Sbjct: 380 DCCKKVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 413
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC V DC V DC K V DC K
Sbjct: 276 DCCKEVKYDCCKEVKYDCCKEVKYDCCK 303
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC V DC + DC K V DC K
Sbjct: 161 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 188
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC + DC V DC K V DC K
Sbjct: 169 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 196
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC V DC + DC K V DC K
Sbjct: 209 DCCKEVKYDCCKDLKNDCCKEVKYDCCK 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC + DC V DC K V DC K
Sbjct: 268 DCCKDLTNDCCKEVKYDCCKEVKYDCCK 295
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC V DC + DC K V DC K
Sbjct: 316 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 343
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC + DC V DC K V DC K
Sbjct: 324 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 351
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 166 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 83
DC V DC + DC K V DC K
Sbjct: 364 DCCKEVKYDCCKDLTNDCCKKVKYDCCK 391
>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1050
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -2
Query: 172 LCDCLNTVGCD---CLNTVGCDCLKTVGCDC 89
LCDC N CD L+ L+TVGC+C
Sbjct: 332 LCDCKNNGTCDFDTVLSVNNASKLRTVGCNC 362
>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 868
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -2
Query: 172 LCDCLNTVGCD---CLNTVGCDCLKTVGCDC 89
LCDC N CD L+ L+TVGC+C
Sbjct: 158 LCDCKNNGTCDFDTVLSVNNASKLRTVGCNC 188
>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 573 SSNSCCCGDCGESNKSGDCDNTHS 502
S++ CG+CG +++SGDC +S
Sbjct: 125 SASRTACGNCGRTHESGDCPARNS 148
>SB_36728| Best HMM Match : ArsD (HMM E-Value=1.6)
Length = 364
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 552 GDCGESNKSGDCDNTHSTDKVDYKRETLGKFHSSVVT 442
G+ ++ K DC HS D + KR FHSS +T
Sbjct: 82 GERAKNLKEEDCKQ-HSVDMISSKRPARNSFHSSEIT 117
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 63 ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVF 158
+++SP +F PT+F PT+ PT+F
Sbjct: 772 VTQSPTLFVTQSPTLFVTQSPTLCVTQSPTLF 803
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 387 SIASETAAQRALQRGLDLESQLMSE 461
SI S T+ QR + RG+ +SQL+SE
Sbjct: 2851 SIDSSTSGQREMDRGVKKKSQLLSE 2875
>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
Length = 604
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 178 GXLCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTA 77
G CD + CD + CD K+ CD K++
Sbjct: 7 GSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTKSS 40
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 178 GXLCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTA 77
G CD + CD + CD K+ CD K++
Sbjct: 256 GSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTKSS 289
>SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6)
Length = 362
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -3
Query: 573 SSNSCCCGDCGESNKSGDCDNTHSTDKVDYKRETLGKFHS 454
S + C GDCG +K CD H ++ HS
Sbjct: 309 SRGNPCSGDCGYKHKCHKCDGDHRPGACTFRAPKRTSNHS 348
>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 561 CCCGDCGESNKSGDCDNTHSTDKVDYKRETLG 466
CCC CG+ K D +KVD++ +G
Sbjct: 81 CCCRKCGKKKKKD--DKRGGKEKVDFRAVQIG 110
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 477 ETLGKFHSSVVTQD--LNLAAEPSAQLSPTQCYS 382
E LG + ++V Q+ LNLA+ +L+ TQ YS
Sbjct: 1010 ELLGNYEQAIVCQEQNLNLASHMGDRLAKTQAYS 1043
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,897
Number of Sequences: 59808
Number of extensions: 233092
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -