Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060643.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical pr...    30   1.8  
X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein...    30   1.8  
M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein...    30   1.8  
M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein ( C.ele...    30   1.8  
M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein ( C.ele...    30   1.8  
D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein...    30   1.8  
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    29   4.1  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    29   4.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      29   4.1  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    28   5.4  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   7.2  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   7.2  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   9.5  

>Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical
           protein T08G5.10 protein.
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical
           protein T05E11.4 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 282 YHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASET 404
           YH   Q ++S DD   +++DD I+S   A +++QN I +++
Sbjct: 386 YHEDSQCSLSTDDDREAKDDDYIDS--DAEEKFQNMIDNDS 424


>X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein-2
           protein.
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-2, complete cds.).
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-1, complete cds.).
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -2

Query: 169 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG*ETACGGGCSRA 2
           CDC N   C C   T  CDC     C+  C  TA  ++     C  G    C GGC  A
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKC----CKSG----CAGGCKCA 54


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 279 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 425
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 279 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 425
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 468 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 516


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -3

Query: 573 SSNSCCCGDCGESNKSGDCDNTHSTDKVDYKRETLGKFHSSVVTQDLNLAAEPSAQLSPT 394
           SS+S        S+ S + ++     KV +K+    K H    +   + ++  S+  S +
Sbjct: 297 SSSSSSSSSSSSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAASSSSSSSSSSSSSSSSS 356

Query: 393 QCYSGTAEKHDP 358
              S   +KH P
Sbjct: 357 SSESEDEKKHAP 368


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 279 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 425
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 300 VNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 425
           +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 449 LNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 490


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 354 SVDRASQQYQNSIASETAAQRALQ 425
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 354 SVDRASQQYQNSIASETAAQRALQ 425
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 169 CDCLNTVGCDCLNTVGCDCLKTVGCDC 89
           CDCLN   CD  ++  C C+   G  C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 169 CDCLNTVGCDCLNTVGCDCLKTVGCDC 89
           CDCLN   CD  ++  C C+   G  C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 169 CDCLNTVGCDCLNTVGCDCLKTVGCDC 89
           CDCLN   CD  ++  C C+   G  C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 169 CDCLNTVGCDCLNTVGCDCLKTVGCDC 89
           CDCLN   CD  ++  C C+   G  C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,531
Number of Sequences: 27780
Number of extensions: 162713
Number of successful extensions: 594
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)