Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060643.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing...    29   2.2  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     27   8.8  
At3g58110.1 68416.m06480 expressed protein                             27   8.8  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    27   8.8  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    27   8.8  

>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein contains Pfam
           profile PF00638: RanBP1 domain
          Length = 443

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 87  KQSQPTVFKQSQPTVFKQSQPTVFKQSQS-XPSGAESGA 200
           K SQP++F  SQ      SQP  F  S S   S +++G+
Sbjct: 203 KSSQPSLFSGSQAGAISNSQPGTFSSSHSGITSNSQTGS 241


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 564 SCCCGDCGESNKSGDCDNTHSTDKVDYKRETLGKFHSSVVTQD 436
           SCCCG CG+        N      +  K+  L K+H S +  D
Sbjct: 735 SCCCGACGQFFLKTTSTNAKEEKFISCKQCEL-KYHPSCLRYD 776


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 264 HSQGVTYHVHGQVN--ISNDDPLLSQEDDTIE-SVDRASQQYQNSIASETAAQRALQRGL 434
           H  G+TYH H  +N  +  ++P   ++   ++  +D+ +   + +  S     R  ++ +
Sbjct: 546 HENGITYHSHNPINKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSV 605

Query: 435 DLESQLMSEI 464
             +  LM+E+
Sbjct: 606 INQQYLMNEL 615


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 75  PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
           P V+K   P V+K   P V   S P V+K
Sbjct: 88  PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 75  PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 161
           P V+K   P V+K   P V   S P V+K
Sbjct: 88  PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,474
Number of Sequences: 28952
Number of extensions: 144170
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)