Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060642.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.1  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   5.4  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   9.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 605 CCRFSVPISGWHGDNMLEL 661
           C R+ V +SG   D  LEL
Sbjct: 558 CIRYDVSLSGLGSDRRLEL 576


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -3

Query: 589 IFLMYEDTSFLIPQIWAHCMVVQWNPFV 506
           +FL  E     +PQ W      QW  ++
Sbjct: 180 VFLFEEKQVQSMPQCWIDLQTWQWKVYI 207



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 334 QRFHQEHDHRNLS 372
           + FH+EHD R  S
Sbjct: 260 RHFHEEHDTRRAS 272


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 493 HRRSKQMDSTEPPYSEPRFEESRRKYP 573
           HR+    +  E  Y E   +ES R YP
Sbjct: 51  HRKPTYNNLQEMKYLERAIKESLRLYP 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,659
Number of Sequences: 336
Number of extensions: 3612
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)