Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060642.seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 186 3e-48
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 185 5e-48
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 185 5e-48
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 99 7e-22
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 96 5e-21
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 76 4e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 8e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.013
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.017
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.022
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.48
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.63
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 1.1
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 27 2.5
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 27 3.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 5.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 186 bits (452), Expect = 3e-48
Identities = 94/143 (65%), Positives = 108/143 (75%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129
Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRNQEGSILIHQEDWLQPSCCRF 616
+GQTREHALLA+TLGVKQLIV VNK + +E S I + + P F
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFIKKVGF-NPKTVPF 188
Query: 617 SVPISGWHGDNMLELSTKMPWFK 685
VP+SG+ GDNM+E +T MPW++
Sbjct: 189 -VPVSGFQGDNMIEPTTNMPWYQ 210
Score = 140 bits (340), Expect = 1e-34
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERXR 258
DKLKAER R
Sbjct: 61 DKLKAERER 69
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 185 bits (451), Expect = 5e-48
Identities = 93/143 (65%), Positives = 108/143 (75%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRNQEGSILIHQEDWLQPSCCRF 616
+GQTREHALLA+TLGVKQLIV VNK + +E S I + + P F
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFIKKVGF-NPKTVPF 188
Query: 617 SVPISGWHGDNMLELSTKMPWFK 685
VP+SG+ GDNM+E +T MPW++
Sbjct: 189 -VPVSGFQGDNMIEPTTNMPWYQ 210
Score = 140 bits (340), Expect = 1e-34
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERXR 258
DKLKAER R
Sbjct: 61 DKLKAERER 69
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 185 bits (451), Expect = 5e-48
Identities = 93/143 (65%), Positives = 108/143 (75%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRNQEGSILIHQEDWLQPSCCRF 616
+GQTREHALLA+TLGVKQLIV VNK + +E S I + + P F
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFIKKVGF-NPKTVPF 188
Query: 617 SVPISGWHGDNMLELSTKMPWFK 685
VP+SG+ GDNM+E +T MPW++
Sbjct: 189 -VPVSGFQGDNMIEPTTNMPWYQ 210
Score = 140 bits (340), Expect = 1e-34
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERXR 258
DKLKAER R
Sbjct: 61 DKLKAERER 69
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 98.7 bits (235), Expect = 7e-22
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLN-HHTVSPDLRNQEGSILIHQEDWLQPSCCR 613
NGQTREHA L LG+ +++V VNK ++ +++N LI + + S
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF-KTSNVH 358
Query: 614 FSVPISGWHGDNML--ELSTKMPWFK 685
F VPIS G N++ + S W+K
Sbjct: 359 F-VPISAISGTNLIQKDSSDLYKWYK 383
Score = 74.1 bits (174), Expect = 2e-14
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 244 AERXR 258
ER R
Sbjct: 235 EERAR 239
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360
Query: 437 NGQTREHALLAFTLGVKQLIVGVNK 511
GQTREHA+LA T G+ L+V +NK
Sbjct: 361 GGQTREHAVLARTQGINHLVVVINK 385
Score = 79.0 bits (186), Expect = 6e-16
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 244 AERXR 258
ER +
Sbjct: 296 EEREK 300
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 76.2 bits (179), Expect = 4e-15
Identities = 39/85 (45%), Positives = 55/85 (64%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155
Query: 437 NGQTREHALLAFTLGVKQLIVGVNK 511
QTREH LLA +GVKQ++V +NK
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 144
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.7 bits (86), Expect = 8e-04
Identities = 30/104 (28%), Positives = 45/104 (43%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 467 AFTLGVKQLIVGVNKWIPLNHHTVSPDLRNQEGSILIHQEDWLQ 598
+ K +G + W + + I I QED L+
Sbjct: 200 RISFVNKMDRMGADPWKVIQQINTKLKIPAAAVQIPIGQEDKLE 243
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 305 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 484
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 485 KQLIVGVNK 511
K +I+ NK
Sbjct: 163 KHIIILQNK 171
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 245 LSVXGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+S+ + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = -3
Query: 295 SFELPESNIDCDTXHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWW 116
S L N D + + V +PK I I++ F P S S C+Y S D W
Sbjct: 12 SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
Query: 115 WT 110
T
Sbjct: 72 RT 73
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 681 NQGILVESSNMLSPCHPEMGTEKRQQLGCSQS 586
+QG+LV + P HPE+G Q + QS
Sbjct: 17 SQGVLVAKKDFNLPKHPEVGVPNLQVIKACQS 48
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 85 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERXRYH 264
++ V+S +ST G +D T+E + ++ +G +Y W++ K+ ER Y
Sbjct: 460 LVYRVNSAQSTAAG---LGPVSLDSNTLENVD--VGDLVEGHLQYRWLVAKILKERLGYD 514
Query: 265 N 267
N
Sbjct: 515 N 515
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 678 QGILVESSNMLSPCHPEMGTEKRQQLGCSQS 586
QG+LV + P HPE+G Q + QS
Sbjct: 18 QGVLVAKKDFNLPKHPEVGVPNLQVIKACQS 48
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 260 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 352
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 493 HRRSKQMDSTEPPYSEPRFEESRRKYPHTSRRLATTQLL 609
+RR ++ +P +++PR ++ K+P T ++ T QLL
Sbjct: 501 YRRHGHNETDQPSFTQPRMYKAIAKHPPTF-KIYTQQLL 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,031
Number of Sequences: 5004
Number of extensions: 59934
Number of successful extensions: 217
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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