Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060642.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   1e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   9e-17
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               36   0.031
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.22 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)                   30   2.0  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      28   6.2  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   6.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 5e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +2

Query: 266 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 445
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 446 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 544
           TREHA+L  +LGV QLIV +NK   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/85 (50%), Positives = 61/85 (71%)
 Frame = +2

Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 437 NGQTREHALLAFTLGVKQLIVGVNK 511
            GQTREHA+LA T GVK L++ VNK
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNK 291



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +1

Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERXR 258
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER +
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +2

Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 373
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +1

Query: 196 MGKGSFKYAWVLDKLKAERXR 258
           MGKGSFKYAWVLDKLKAER R
Sbjct: 1   MGKGSFKYAWVLDKLKAERER 21


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
 Frame = +2

Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 436
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 437 NGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPD-LRNQEGSILIHQEDW 592
             QT+E    A   GV  +I  +NK   ++    +PD ++ Q  ++ +  EDW
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINK---IDKPNANPDNIKTQLSTMNLLVEDW 224


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 317 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 496
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 497 VGVNK 511
           +  NK
Sbjct: 123 ILQNK 127


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
           E+    + ++R  P   ++ T I + V+G+V+SGKST  G L Y
Sbjct: 92  EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
          Length = 169

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 475 PRCQTAHRRSKQMDSTEPPYSEPRFEESRRKYPHTSRRLATTQ 603
           PR     RR+ +     PPY E R  E+R K P+  RR + T+
Sbjct: 77  PRPPYDDRRTSET-RPRPPYDERRVSENRPKPPYDDRRTSETR 118


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 76   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 463 ARFHPRCQTAHRRSKQMDSTEPPYSEPRFEESRRKYPHTSR 585
           A F PR +  +R  ++ +    PYS+   EE R+   H +R
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERKHSLHRTR 158


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 138
           ELG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,654,998
Number of Sequences: 59808
Number of extensions: 457242
Number of successful extensions: 1102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)