SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060641.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB77D0 Cluster: PREDICTED: similar to nuclear au...    60   4e-08
UniRef50_UPI00015B54EE Cluster: PREDICTED: similar to Nuclear au...    54   2e-06
UniRef50_Q5ZMP5 Cluster: Putative uncharacterized protein; n=4; ...    52   1e-05
UniRef50_Q5T626 Cluster: Nuclear autoantigenic sperm protein (Hi...    48   2e-04
UniRef50_P49321 Cluster: Nuclear autoantigenic sperm protein; n=...    48   2e-04
UniRef50_P06180 Cluster: Histone-binding protein N1/N2; n=7; Euk...    48   2e-04
UniRef50_Q02508 Cluster: Protein HGV2; n=1; Halocynthia roretzi|...    47   5e-04
UniRef50_A7SJG6 Cluster: Predicted protein; n=1; Nematostella ve...    45   0.002
UniRef50_UPI0000D5649D Cluster: PREDICTED: similar to nuclear au...    45   0.002
UniRef50_Q7ZVH7 Cluster: Nuclear autoantigenic sperm protein; n=...    44   0.005
UniRef50_Q9BMI5 Cluster: Nuclear histone binding protein; n=2; S...    42   0.011
UniRef50_Q4RJ84 Cluster: Chromosome 1 SCAF15039, whole genome sh...    42   0.014
UniRef50_Q0IFB8 Cluster: Putative uncharacterized protein; n=1; ...    38   0.17 
UniRef50_Q5DDB4 Cluster: SJCHGC02423 protein; n=1; Schistosoma j...    36   0.93 
UniRef50_A5LJU6 Cluster: Holliday junction-specific endonuclease...    35   1.6  
UniRef50_Q6Z4S6 Cluster: Tetratricopeptide repeat-containing pro...    35   2.1  
UniRef50_Q17886 Cluster: Putative uncharacterized protein nasp-1...    34   3.7  
UniRef50_Q7UEV9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q2J4G6 Cluster: Nitrogenase-stabilizing/protective prot...    33   4.9  
UniRef50_Q4A688 Cluster: DNA polymerase IV; n=2; Mycoplasma syno...    33   8.6  
UniRef50_A6F0X5 Cluster: 5'-methylthioadenosine phosphorylase; n...    33   8.6  
UniRef50_A1UG87 Cluster: Fumarylacetoacetate (FAA) hydrolase; n=...    33   8.6  
UniRef50_Q98S43 Cluster: AMP-activated protein kinase, beta 2 no...    33   8.6  
UniRef50_Q7XFV9 Cluster: HAT family dimerisation domain containi...    33   8.6  
UniRef50_Q0J111 Cluster: Os09g0471200 protein; n=7; Oryza sativa...    33   8.6  
UniRef50_A2Z288 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_UPI0000DB77D0 Cluster: PREDICTED: similar to nuclear
           autoantigenic sperm protein (histone-binding); n=1; Apis
           mellifera|Rep: PREDICTED: similar to nuclear
           autoantigenic sperm protein (histone-binding) - Apis
           mellifera
          Length = 459

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGS 368
           +HGDTAD+  E YL YG+ALLGL+R+E+GVLG G+PG+
Sbjct: 46  KHGDTADELGEPYLLYGRALLGLAREEAGVLGGGVPGT 83



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +1

Query: 124 MADMIEVSTAT-PAELLGAGRRHLAVRDFNSAAEVLAKACELLAK 255
           MAD+ E +  T PA  +  G+RHL VRD+  A   LA+AC+LLA+
Sbjct: 1   MADVAENAAFTDPATAISHGKRHLLVRDYTMAVTALAQACQLLAE 45


>UniRef50_UPI00015B54EE Cluster: PREDICTED: similar to Nuclear
           autoantigenic sperm protein (histone-binding); n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to Nuclear
           autoantigenic sperm protein (histone-binding) - Nasonia
           vitripennis
          Length = 441

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGS 368
           +HG+ AD+  E YL YG+ALL L+R+E+GVLG G+PG+
Sbjct: 46  QHGEMADELGEPYLLYGRALLSLAREEAGVLGTGVPGT 83



 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 MADMIEVST-ATPAELLGAGRRHLAVRDFNSAAEVLAKACELLA 252
           MAD+ E +     A  +  G+RHL VRD+  A   LA  C +LA
Sbjct: 1   MADVTEQTKHEDAATAISQGKRHLLVRDYCMAVTALADGCAMLA 44


>UniRef50_Q5ZMP5 Cluster: Putative uncharacterized protein; n=4;
           Gallus gallus|Rep: Putative uncharacterized protein -
           Gallus gallus (Chicken)
          Length = 456

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 34/40 (85%)
 Frame = +3

Query: 246 VG*EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           +G ++G+TAD+CAEA+ +YG++LL L+R E+GVLG+ + G
Sbjct: 54  LGKKYGETADECAEAFFYYGKSLLELARMENGVLGNALEG 93


>UniRef50_Q5T626 Cluster: Nuclear autoantigenic sperm protein
           (Histone-binding) (Nuclear autoantigenic sperm protein
           (Histone-binding), isoform CRA_a); n=13; Mammalia|Rep:
           Nuclear autoantigenic sperm protein (Histone-binding)
           (Nuclear autoantigenic sperm protein (Histone-binding),
           isoform CRA_a) - Homo sapiens (Human)
          Length = 449

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 33/40 (82%)
 Frame = +3

Query: 246 VG*EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           +G ++G+TA++C EA+ +YG++LL L+R E+GVLG+ + G
Sbjct: 73  LGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEG 112


>UniRef50_P49321 Cluster: Nuclear autoantigenic sperm protein; n=43;
           Eutheria|Rep: Nuclear autoantigenic sperm protein - Homo
           sapiens (Human)
          Length = 788

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 33/40 (82%)
 Frame = +3

Query: 246 VG*EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           +G ++G+TA++C EA+ +YG++LL L+R E+GVLG+ + G
Sbjct: 73  LGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEG 112


>UniRef50_P06180 Cluster: Histone-binding protein N1/N2; n=7;
           Eukaryota|Rep: Histone-binding protein N1/N2 - Xenopus
           laevis (African clawed frog)
          Length = 590

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 20/37 (54%), Positives = 30/37 (81%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           ++G+TAD+CAEA+  YG +LL L+R E+GVLG+ + G
Sbjct: 69  QYGETADECAEAFYSYGMSLLELARLENGVLGNALEG 105



 Score = 37.1 bits (82), Expect = 0.40
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +1

Query: 127 ADMIEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLAK 255
           AD I++ T     L+GAG++HL ++D  SA  +  +A  LLAK
Sbjct: 27  ADGIDIDTEAK-RLMGAGQKHLVMKDVRSAVNLFQEASSLLAK 68


>UniRef50_Q02508 Cluster: Protein HGV2; n=1; Halocynthia
           roretzi|Rep: Protein HGV2 - Halocynthia roretzi (Sea
           squirt)
          Length = 510

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           +HG  A++C EAY +YG +LL L+R E+GVLG+ + G
Sbjct: 59  KHGQMAEECCEAYYYYGVSLLELARLENGVLGNALKG 95


>UniRef50_A7SJG6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 449

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +3

Query: 273 DQCAEAYLWYGQALLGLSRDESGVLGDGM 359
           D+C EAYLWYG+AL  L+R E GVLG+ +
Sbjct: 66  DKCGEAYLWYGKALFELARMEGGVLGNAL 94


>UniRef50_UPI0000D5649D Cluster: PREDICTED: similar to nuclear
           autoantigenic sperm protein isoform 3; n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to nuclear
           autoantigenic sperm protein isoform 3 - Tribolium
           castaneum
          Length = 384

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 255 EHG-DTADQCAEAYLWYGQALLGLSRDESGVLGDGM 359
           EHG D  D   + YL+YG++LL LSR ESG LGDG+
Sbjct: 81  EHGSDVHDSLGDVYLYYGKSLLELSRKESGPLGDGV 116



 Score = 36.3 bits (80), Expect = 0.70
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 MADM-IEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLA 252
           MAD+ ++   + P EL G G R   ++DF++A +  +KA ELLA
Sbjct: 36  MADVALDPQNSNPKELFGQGVRAYVLQDFDTAVKAFSKASELLA 79


>UniRef50_Q7ZVH7 Cluster: Nuclear autoantigenic sperm protein; n=6;
           Clupeocephala|Rep: Nuclear autoantigenic sperm protein -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 624

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           ++GDTAD+C E + + G+ALL L+R E+ VLG+ + G
Sbjct: 67  KYGDTADECGEVFFFCGKALLELARMENTVLGNALEG 103



 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 ELLGAGRRHLAVRDFNSAAEVLAKACELLAK 255
           +L+G G RHL + D  SA  V  +AC +LA+
Sbjct: 36  KLIGTGSRHLVMGDVVSAVSVFQEACAMLAE 66


>UniRef50_Q9BMI5 Cluster: Nuclear histone binding protein; n=2;
           Strongylocentrotus purpuratus|Rep: Nuclear histone
           binding protein - Strongylocentrotus purpuratus (Purple
           sea urchin)
          Length = 186

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           ++G+TA++C +AY  YG +LL L+  E+GVLG+ + G
Sbjct: 57  KYGETAEECGDAYYQYGCSLLELASMENGVLGNALQG 93



 Score = 33.5 bits (73), Expect = 4.9
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 151 ATPAELLGAGRRHLAVRDFNSAAEVLAKACELLA 252
           A   EL+G G+R+L V D  +A +   +ACELLA
Sbjct: 22  AEALELMGQGKRNLVVGDPPAAVQCFQEACELLA 55


>UniRef50_Q4RJ84 Cluster: Chromosome 1 SCAF15039, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 1
           SCAF15039, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 451

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +3

Query: 255 EHGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           ++GDTAD+C EA    G++LL L+R E+ VLG+ + G
Sbjct: 71  KYGDTADECGEALFLCGKSLLELARMENSVLGNALEG 107


>UniRef50_Q0IFB8 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 407

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +3

Query: 258 HGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGSG 371
           +G TAD+C  AYL Y ++L+ L +DE+ ++   +PG G
Sbjct: 52  YGPTADECGVAYLLYAKSLIALGKDENNLI---VPGEG 86


>UniRef50_Q5DDB4 Cluster: SJCHGC02423 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02423 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 422

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 258 HGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPG 365
           HGD  +  A   L YG ALL LSR ES V+G+ + G
Sbjct: 39  HGDFHESLAVPNLLYGTALLELSRIESSVIGNALDG 74



 Score = 34.3 bits (75), Expect = 2.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 PAELLGAGRRHLAVRDFNSAAEVLAKACELLA 252
           P EL+  GRR L   D N A E   KACE L+
Sbjct: 5   PEELVVQGRRSLVCGDINKAVETFQKACETLS 36


>UniRef50_A5LJU6 Cluster: Holliday junction-specific endonuclease;
           n=11; Streptococcus pneumoniae|Rep: Holliday
           junction-specific endonuclease - Streptococcus
           pneumoniae SP6-BS73
          Length = 464

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 497 GGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDXSVVNMG 646
           G    T  +    +Q+++S +  ASS  T   +PS+SN+  +  S VNMG
Sbjct: 313 GKSQQTSTSSSSSSQTSSSSSSQASSNTTSEPKPSSSNETRSSRSEVNMG 362


>UniRef50_Q6Z4S6 Cluster: Tetratricopeptide repeat-containing
           protein-like; n=5; Spermatophyta|Rep: Tetratricopeptide
           repeat-containing protein-like - Oryza sativa subsp.
           japonica (Rice)
          Length = 469

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 258 HGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGSGN 374
           HG+ A +C   Y  YG ALL  ++DE+  LG+    S N
Sbjct: 85  HGELAPECVSTYFKYGCALLYKAQDEADPLGNVPKSSSN 123


>UniRef50_Q17886 Cluster: Putative uncharacterized protein nasp-1;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein nasp-1 - Caenorhabditis elegans
          Length = 382

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 130 DMIEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLAK--NMVTQRTSVLRHIYGM 303
           + +E      AELL AGRR L V D + A++ L++A EL ++      + T    + YGM
Sbjct: 33  ETVEQKEKRLAELLAAGRRALKVNDIDKASDSLSEATELSSEIYGENHENTFDSLYYYGM 92

Query: 304 A 306
           A
Sbjct: 93  A 93


>UniRef50_Q7UEV9 Cluster: Putative uncharacterized protein; n=1;
            Pirellula sp.|Rep: Putative uncharacterized protein -
            Rhodopirellula baltica
          Length = 1257

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 515  KXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDD 616
            K AE+KPA +  +DAP A + V + ++P+ S  D
Sbjct: 1223 KPAEVKPADTAPADAPKAEAPVAEASKPAASEGD 1256


>UniRef50_Q2J4G6 Cluster: Nitrogenase-stabilizing/protective protein
           nifW; n=6; Frankia|Rep:
           Nitrogenase-stabilizing/protective protein nifW -
           Frankia sp. (strain CcI3)
          Length = 151

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 364 PGIPSPKTPLSSLDKPNSAWPYHKYASAHW 275
           P +P P  P   ++   SAWP+H  ASA +
Sbjct: 117 PTVPQPSAPSDPVEPSQSAWPHHAAASADY 146


>UniRef50_Q4A688 Cluster: DNA polymerase IV; n=2; Mycoplasma
           synoviae 53|Rep: DNA polymerase IV - Mycoplasma synoviae
           (strain 53)
          Length = 413

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 100 LTKYCE*FNCIWLFCYKMWKTQYINKR 20
           + +YC+ F C W + Y++++  Y NK+
Sbjct: 309 IPQYCQEFKCFWKYAYEIYQKNYENKK 335


>UniRef50_A6F0X5 Cluster: 5'-methylthioadenosine phosphorylase; n=1;
           Marinobacter algicola DG893|Rep: 5'-methylthioadenosine
           phosphorylase - Marinobacter algicola DG893
          Length = 305

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 563 GASSEVTDNAEPSTSNDDANDXSVVNMGSGDDV 661
           GA  E T N +P+  ND+A D S+ +M +G D+
Sbjct: 222 GAGQEATGNDQPALENDEARD-SLASMATGGDI 253


>UniRef50_A1UG87 Cluster: Fumarylacetoacetate (FAA) hydrolase; n=3;
           Mycobacterium|Rep: Fumarylacetoacetate (FAA) hydrolase -
           Mycobacterium sp. (strain KMS)
          Length = 321

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -1

Query: 308 LAIP*ICLSTLVRCVTMFLANSSQALASTSAAE--LKSLTAKWR--RPAPSNSAGVAVDT 141
           L++P + ++TL+      L   + AL+   AAE  L S    W   +P PS   GVAV+ 
Sbjct: 30  LSLPDLTVATLIADADRLLPKLAAALSEPVAAEAVLDSADISWLAPQPHPSKIVGVAVNN 89

Query: 140 SIISAIAKR 114
           S I+  A R
Sbjct: 90  SGIARFAYR 98


>UniRef50_Q98S43 Cluster: AMP-activated protein kinase, beta 2
           non-catalytic SU; n=1; Guillardia theta|Rep:
           AMP-activated protein kinase, beta 2 non-catalytic SU -
           Guillardia theta (Cryptomonas phi)
          Length = 256

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 8   RNTRTFINVLCFPHFITK*PDTVKLFTIFCKIKNKFFSL 124
           +N R F+N L F  F  K    +KL  I  +IKNKFF+L
Sbjct: 194 QNIRVFLNHLIFFDFKCKHNHRIKLPLIKIRIKNKFFTL 232


>UniRef50_Q7XFV9 Cluster: HAT family dimerisation domain containing
           protein, expressed; n=5; Oryza sativa|Rep: HAT family
           dimerisation domain containing protein, expressed -
           Oryza sativa subsp. japonica (Rice)
          Length = 505

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 491 FNGGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDAND--XSVVNMGSGDD 658
           ++ G+   +  E   A+   SD+P  S    ++ + S+S+ +AND   +VV++GS +D
Sbjct: 276 YDEGKARLEDVEEDSAEDYVSDSPRGSPTYAESGDSSSSDGEANDDVDAVVDVGSEED 333


>UniRef50_Q0J111 Cluster: Os09g0471200 protein; n=7; Oryza sativa
           (japonica cultivar-group)|Rep: Os09g0471200 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 756

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -2

Query: 370 PDPGIPSPKTPLSSLDKPNSAWPYHKYASAHWSAVSPCS*PTV 242
           P  GI S +     LD PN  W Y  Y S   +  SPCS  TV
Sbjct: 185 PKDGICSGEAGCCKLDFPNGTWYYSTYFSKRNNNSSPCSFITV 227


>UniRef50_A2Z288 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 497

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -2

Query: 370 PDPGIPSPKTPLSSLDKPNSAWPYHKYASAHWSAVSPCS*PTV 242
           P  GI S +     LD PN  W Y  Y S   +  SPCS  TV
Sbjct: 185 PKDGICSGEAGCCKLDFPNGTWYYSTYFSKRNNNSSPCSFITV 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,407,712
Number of Sequences: 1657284
Number of extensions: 10415758
Number of successful extensions: 37175
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 34784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37108
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -