Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060641.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    30   0.27 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   1.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   5.9  
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    26   5.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.8  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 242 SQALASTSAAELKSLTAKWRRPAPSNSAGVAVDTSIISAIAKRIY 108
           +Q+  STS +   S+ + +  P  SNS  V   TSIIS+IA   Y
Sbjct: 791 TQSSISTSVSSQSSMNSSYSSPISSNS--VTSSTSIISSIASSSY 833


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 144 YFNHISHSEKNLFLILQNIVNNLTVSGYFVIKCGKHNTLINVRVF 10
           ++N+    E+NL L  +++V   +V+  F+  CG  +T +N+R F
Sbjct: 277 FYNNSVLEEQNL-LFYRDLVKKYSVNPQFLDACGLGSTWLNMRGF 320


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 548 TSDAPGASSEVTDNAEPSTSNDDANDXSVVNMGSGDDV 661
           TS+    SS   D   P+++NDDAN+    +     D+
Sbjct: 33  TSNVQNLSSGNDDQQYPNSTNDDANNGLTASQAKLQDI 70


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -1

Query: 281 TLVRCVTMFLANSSQALASTSAAELKSLTAKWRRPAPSNSAGVAVDTSI 135
           T   C T   A++     STS+    S T     P PS S      TSI
Sbjct: 73  TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 560 PGASSEVTDNAEPSTSNDDANDXSVVNMGS 649
           P  S +  D  + S+S  +AND +V N+GS
Sbjct: 133 PSNSPQAFDLTQGSSSTHNANDFTVNNVGS 162


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 92  FCKI-KNKFFSLWLI*LK-YQQQLRRSYLVLVDATWLLETLIRLLKYWPKLVNCW 250
           F K+ K  F+ +W+     YQQ+L  +   LV   W+   ++    +W  +   W
Sbjct: 41  FLKLWKGLFYCMWMADKPLYQQKLSDNLAALVPIVWIDNRILFQSTFWETMGREW 95


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 373 LPDPGIPSPKTPLSSLDKPN 314
           LP  GI    TPLSS+ +PN
Sbjct: 60  LPKRGILKTSTPLSSIKQPN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,117
Number of Sequences: 5004
Number of extensions: 42863
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)