Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060641.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0166 + 1164903-1165144,1165839-1166074,1166719-1166781,116... 35 0.070
10_05_0031 + 8356046-8356361,8356439-8356648,8356735-8357043,835... 33 0.28
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 33 0.28
02_01_0457 - 3283759-3285240 31 0.65
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 29 2.6
06_01_0316 + 2274842-2275354,2275455-2275588,2276828-2276941,227... 29 4.6
02_05_0115 - 25965275-25965517,25965806-25965961,25966103-259661... 28 6.0
02_05_0814 - 31970558-31971126,31971242-31971413 28 8.0
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731... 28 8.0
01_04_0013 + 15081879-15082370,15093535-15094050 28 8.0
>07_01_0166 +
1164903-1165144,1165839-1166074,1166719-1166781,
1166808-1167017,1167098-1167263,1167537-1167780,
1167970-1168362
Length = 517
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 258 HGDTADQCAEAYLWYGQALLGLSRDESGVLGDGMPGSGN 374
HG+ A +C Y YG ALL ++DE+ LG+ S N
Sbjct: 85 HGELAPECVSTYFKYGCALLYKAQDEADPLGNVPKSSSN 123
>10_05_0031 +
8356046-8356361,8356439-8356648,8356735-8357043,
8357225-8357347,8357428-8357502,8357597-8357687,
8357775-8357866,8357890-8358020
Length = 448
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 491 FNGGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDAND--XSVVNMGSGDD 658
++ G+ + E A+ SD+P S ++ + S+S+ +AND +VV++GS +D
Sbjct: 276 YDEGKARLEDVEEDSAEDYVSDSPRGSPTYAESGDSSSSDGEANDDVDAVVDVGSEED 333
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 370 PDPGIPSPKTPLSSLDKPNSAWPYHKYASAHWSAVSPCS*PTV 242
P GI S + LD PN W Y Y S + SPCS TV
Sbjct: 185 PKDGICSGEAGCCKLDFPNGTWYYSTYFSKRNNNSSPCSFITV 227
>02_01_0457 - 3283759-3285240
Length = 493
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 491 FNGGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDXSVVNMGSGDDV 661
F G R S++ ++TTSD+P S+ +D + S S + N ++++ +G D+
Sbjct: 301 FEGNRASSRDKVYTNGEATTSDSPECSN--SDGKQASLSLPNLNAFDIISLSTGFDL 355
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 370 PDPGIPSPKTPLSSLDKPNSAWPYH 296
P P +P+P LSS ++P+ +PY+
Sbjct: 219 PAPSMPAPAPTLSSPERPHGGFPYY 243
>06_01_0316 +
2274842-2275354,2275455-2275588,2276828-2276941,
2277046-2277232,2277326-2277394,2277570-2277836
Length = 427
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 130 DMIEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLAKNMVTQRTS 279
DM++V T A RR VRD+NS +L + N T+R S
Sbjct: 218 DMVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLS 267
>02_05_0115 -
25965275-25965517,25965806-25965961,25966103-25966128,
25966177-25966289,25966428-25966541,25968328-25968461,
25968565-25969083
Length = 434
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 121 AMADMIEVSTATPAELLGAGRRHLAVRDFNSAAEVLAKACELLAKNMVTQRTS 279
A DM++V T A RR VRD+NS +L + + T+R S
Sbjct: 217 AWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLS 269
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 376 TLPDPGIPSPKTPLSSLDKPNSAWP 302
T P+P P+P TP S P + +P
Sbjct: 153 TTPNPSTPTPTTPYPSTPMPTTPYP 177
>01_05_0502 +
22771428-22771466,22772327-22772430,22773043-22773129,
22773212-22773287,22773393-22773467,22773639-22773692,
22773745-22773918,22774002-22774061,22774135-22774251,
22774448-22774542,22774811-22775013,22775177-22775274,
22775451-22775587,22776154-22776219,22776300-22776465,
22776537-22776659,22776763-22776845,22776943-22777084,
22777334-22777363,22777587-22777657,22777742-22778333
Length = 863
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 491 FNGGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDXSVVNMGSG 652
F+G R T P+ S S+ +E TD+ E +D D VN+G+G
Sbjct: 678 FDGERGITDRLAAVPSSSPNSEEISPDTEETDDGEVVIGTEDHMD--TVNLGNG 729
>01_04_0013 + 15081879-15082370,15093535-15094050
Length = 335
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 497 GGRYSTKXAELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDXSVVNMGSG 652
GG + K + +P ++TT+ G S V +NDD + N GSG
Sbjct: 248 GGADADKDGKAEPPKTTTN---GGSGGVDAEGSKQKNNDDCPKTTTTNDGSG 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,614
Number of Sequences: 37544
Number of extensions: 288427
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -