Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060641.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               29   2.7  
SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)                 29   4.7  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    28   6.2  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                28   8.1  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 176 LVDATWLLETLIRLLKYWPKLVNCW 250
           LVD TW+  TL+RLL+    L NCW
Sbjct: 27  LVDLTWI-RTLVRLLEKRRPLRNCW 50


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 117 KNLFLILQNIVNNLTVSGYFVIK--CGKHNTLINVRVFLV 4
           KN+ +++ NIVNN+ +S   VI      +NT++   + +V
Sbjct: 156 KNIIIVINNIVNNIIISNNIVINNIVVINNTIVTKTIIIV 195


>SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 89  IFCKIKNKFFSLWLI*LKYQQQLRRSYLVLVDATWLLETLIRLLKY 226
           +F  ++  + ++W   L+++    R+Y+V +  TW    +  L+ Y
Sbjct: 133 VFISVERMYATVWP--LRHRNTRHRTYMVFIGVTWCAGAVFALMSY 176


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 497 GGRYSTKX-AELKPAQSTTSDAPGASSEVTDNAEPSTSNDDANDXSVVNMGSGDDVDQFS 673
           GGRY  +  A+  P+ S+   A    +E  ++ EPST     +       G   D  Q  
Sbjct: 709 GGRYERRLSAKTSPSMSSFVQAWMRGTEGCEDEEPSTPGKHVSTLQTTGFGESMDASQQV 768

Query: 674 SLL 682
            LL
Sbjct: 769 ELL 771


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 290 CLSTLVRCVTMFLANSSQALASTSAAELKSLTAKWRRPAPSNSAGVAVD 144
           CL+  +R  T  L     AL S S AE+KS T K   PA  +   +  D
Sbjct: 141 CLAVKMRTFTCVLLILVIALVSISTAEMKSKTKKPAVPAKKSEGPMKKD 189


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 509  STKXAELKPAQSTTSDAPGASSEVTDNAEPSTS 607
            +TK    KPA  TT+  PG  +     A+P T+
Sbjct: 6343 TTKAPTTKPASKTTTTRPGTKAGAAATAKPPTA 6375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,890
Number of Sequences: 59808
Number of extensions: 318131
Number of successful extensions: 1133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)