Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060641.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 29 2.2
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 29 3.8
At1g32810.1 68414.m04044 expressed protein 29 3.8
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 29 3.8
At5g33220.1 68418.m03924 hypothetical protein contains Pfam prof... 28 5.0
At2g01750.1 68415.m00104 expressed protein 28 5.0
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 6.7
At3g46750.1 68416.m05075 hypothetical protein 28 6.7
At3g54500.2 68416.m06031 expressed protein 27 8.8
At3g54500.1 68416.m06030 expressed protein 27 8.8
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 137 LKYQQQLRRSYLVLVDATWLLETLIRLLKYWPKLVNCWLR 256
LK +++L+ L+++D TW I L W KL+ C ++
Sbjct: 288 LKEKEELKVRNLIVLDGTWSKARRIYLENPWLKLLRCHVK 327
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 376 TLPDPGIPSPKTPLSSLDKPNSAWP 302
T+P P +PSPK P S+ P+ P
Sbjct: 38 TVPSPKVPSPKYPSPSIPSPSVPTP 62
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 YSTKXAELKPAQST-TSDAPGASSEVTDNAEPSTSNDDANDXSVVN 640
YS++ L P +T TS P +SSE+ ++ +PS + N+ + V+
Sbjct: 418 YSSRKVLLPPNSTTSTSSGPCSSSELNEHNKPSPHSSPRNNGTPVH 463
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 576 SELAPGASLVVDCAGFNSASFVEYLPPLK*IQPHCVQFYSFQ 451
S +P +S +VDCA PL + P+ V Y+FQ
Sbjct: 180 SHFSPNSSSIVDCASSEPYGHHTMDAPLSEVSPNLVPGYAFQ 221
>At5g33220.1 68418.m03924 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 587
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 569 SSEVTDNAEPSTSNDDANDXSVVNMGSGDDVDQFS 673
+ E +P+TS+ DA D N GD +D FS
Sbjct: 96 TEEEAGEIQPTTSDCDAADLGHSNAVGGDSIDDFS 130
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 175 AGRRHLAVRDFNSAAEVLAKACELLAKNMVTQRTSVLRHIYGMAK 309
A + ++RD + A E+LAK E L K M + + R + M K
Sbjct: 537 ANDKDQSLRDKDEAIEMLAKKVETLTKAMEVEAKKMRREVAAMEK 581
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 373 LPDPGIPSPKTPLSSLDKP 317
LP+P +PSPK P S+ P
Sbjct: 39 LPNPKVPSPKVPTPSVPSP 57
>At3g46750.1 68416.m05075 hypothetical protein
Length = 415
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 512 TKXAELKPAQSTTSDAPGA-SSEVTDNA--EPSTSNDDANDXSVVNMGSGDDVDQFSSLL 682
T +L P + SDA A + ++ D A EP+ ++ ND + +N + F++ +
Sbjct: 246 TVTEKLAPGYAKVSDATQAITKKIQDMAFPEPTEREEEVNDVAEINTAGTNQPTGFNTKV 305
Query: 683 W 685
W
Sbjct: 306 W 306
>At3g54500.2 68416.m06031 expressed protein
Length = 648
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 563 GASSEVTDNAEPSTSNDDANDXSVVNMGSGDDVDQFSS 676
G ++ +++ S D +D S N+GS DD+D+ S
Sbjct: 125 GKGPDIFHSSDESKEQGDFDDYSWANIGSFDDLDRMFS 162
>At3g54500.1 68416.m06030 expressed protein
Length = 648
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 563 GASSEVTDNAEPSTSNDDANDXSVVNMGSGDDVDQFSS 676
G ++ +++ S D +D S N+GS DD+D+ S
Sbjct: 125 GKGPDIFHSSDESKEQGDFDDYSWANIGSFDDLDRMFS 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,483
Number of Sequences: 28952
Number of extensions: 226051
Number of successful extensions: 702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -