Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060640.seq
         (687 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    44   6e-06
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    44   6e-06
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    26   1.3  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    25   1.7  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    23   9.0  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 43.6 bits (98), Expect = 6e-06
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -3

Query: 97  YTIKNCEMECEARALLDVCNCVHYYMP 17
           Y+  NCE+ECEA+ +L+ C CV YY+P
Sbjct: 361 YSRNNCELECEAKLILENCGCVLYYLP 387


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 43.6 bits (98), Expect = 6e-06
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -3

Query: 97  YTIKNCEMECEARALLDVCNCVHYYMP 17
           Y+  NCE+ECEA+ +L+ C CV YY+P
Sbjct: 361 YSRNNCELECEAKLILENCGCVLYYLP 387


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 463 VFTPINS*LKQACSFTRSCVNIFLSFDCSR 552
           +F PIN+     C+F + C+ IF S+ C R
Sbjct: 779 IFAPINN--TGDCTFLQDCIEIFCSW-CKR 805


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 437 SHKKHIHSFYMCVYFFYCLHGWTSSRPTLC*VVTGAHRH 321
           SH  H   +YM  Y  Y  H + ++ P    +  G H H
Sbjct: 134 SHYSHNQYYYMQNYSNYSQHNFQTAGPISSGLYNGHHPH 172


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 205 LIYYRSRLSIFKQYIFFYKIDNNHTKRHRVC 297
           L Y R +    + YIF +  D+ HT R   C
Sbjct: 146 LPYARQKFGDEEHYIFQHDNDSKHTSRTVKC 176


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,093
Number of Sequences: 2352
Number of extensions: 11040
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)