Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060640.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 125 MTRNSTLYPRDFGRGCSTP 181
           M  N+T+Y  D   GC TP
Sbjct: 397 MVDNTTIYKYDVRDGCRTP 415


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 99  LTRLRTAKWSVKPELYSTYATVYIIICPVSLV 4
           L +L    W + P L  ++ ++ I++C  S++
Sbjct: 96  LLQLTGGTWELGPMLCDSWVSLDILLCTASIL 127


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 186 LLGVLQPLPKSLGYKVEFLVMK 121
           LL +  P   SL Y+VEFL+ +
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQ 115


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 186 LLGVLQPLPKSLGYKVEFLVMK 121
           LL +  P   SL Y+VEFL+ +
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQ 115


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 186 LLGVLQPLPKSLGYKVEFLVMK 121
           LL +  P   SL Y+VEFL+ +
Sbjct: 145 LLSLASPDESSLKYEVEFLLQQ 166


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 186 LLGVLQPLPKSLGYKVEFLVMK 121
           LL +  P   SL Y+VEFL+ +
Sbjct: 94  LLSLASPDESSLKYEVEFLLQQ 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,314
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)