Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060637.seq
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 9e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 93 1e-19
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 89 2e-18
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 6e-15
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.27
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 2.6
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) 29 3.4
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 29 3.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 28 4.5
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 28 4.5
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 9e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 267 IDIALWKFETSKYYVTIIDAPGXRDFIKXMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 446
+D+ L +F+T +T++DAPG +DFI MITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 447 TREHALLAFXLGVKXLI 497
TREHA+L LGV LI
Sbjct: 61 TREHAILVRSLGVTQLI 77
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 89.4 bits (212), Expect = 2e-18
Identities = 41/99 (41%), Positives = 61/99 (61%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGXRDFIKXMITGTSQADCAVLIVAAGTGEFEAGISK 437
G T+++ F+T + T++DAPG + F+ MI+G +QAD VL+++A GEFE G +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266
Query: 438 NGQTREHALLAFXLGVKXLIRRSXXMGSTEPPYSEPRFE 554
GQTREHA+LA GVK L+ M ++E R+E
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYE 305
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 77.8 bits (183), Expect = 6e-15
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGXRDFIKXMITGTSQ 374
GITIDIALWKFET KYYVT+IDAPG RDFIK MITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAERD 255
MGKGSFKYAWVLDKLKAER+
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
E+ + ++R P ++ T I + V+G+V+SGKST G L Y
Sbjct: 92 EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 309 VTIIDAPGXRDFIKXMITGTSQADCAVLIVAAGTG 413
+T ID PG F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGXRDFIKXMITGTSQADCAVLIVAA 404
GIT I + + + +D PG F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
Length = 250
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 151 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDXVSQSI--LLSGSSKLASTMLPSLM 324
IDK T K+EK+ E K K A++ DK + D V +I L + L + +LP+ +
Sbjct: 81 IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138
Query: 325 LLDXE 339
D E
Sbjct: 139 NKDVE 143
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGXRDFIKXMITGTSQADCAVLIVAAGTG 413
GI++ ++ F + I+D PG +DF + + D ++++ G
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 28.3 bits (60), Expect = 4.5
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 222
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 223 WV--LDKLKAERDXVSQSIL-LSGSSKLASTMLPSLMLL 330
L +E D + +++ G + L T++ ++
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 138
ELG ++++R +M + + + V+G+VD+GKST G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,801
Number of Sequences: 59808
Number of extensions: 295694
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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