Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060636.seq
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  30   1.9  
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)                28   5.9  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPETSCACPETSCACPESS 248
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPETSCACPETSCACPESS 248
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPETSCACPETSCACP 239
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 147  CVSQNTGTCPESSCACPETSCACPETSCACPESSL 251
            C+  N   C + +  C   S  CP+ S  CP+S++
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSNV 1031



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 153  SQNTGTCPESSCACPETSCACPETSCACPESSL 251
            S++  TC   S  CP+ S  CP+++    E+S+
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETSV 1038


>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 144 TCVSQNTG-TC--PESSCACPETSCACPETSCACPESSLC 254
           TCV Q  G TC  P+SS  CP+   A P +S  C   + C
Sbjct: 293 TCVDQVNGFTCLLPDSSETCPDNVGANPCSSNPCRNGATC 332


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 QNTGTCPESSCACPETSCACPETSCACPESS 248
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 156 QNTGTCPESSCACPETSCACPETSCACPESS 248
           +   T PE + A PE + A PE + A PE +
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGN 163


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 SCSFCKLY*TCVSQNTGTCPESSCACPETSCACPETSCACPESSLC 254
           +CSF  +Y    ++N    P  S +CP  +  C  T    PE+S C
Sbjct: 661 TCSFRSVYDWIQAKNRSVTPSGS-SCPGGNKFCLATYSCIPEASNC 705


>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
          Length = 117

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 171 CPESSCACPETSCACPETSCACP 239
           CP +  ACP T   CP T   CP
Sbjct: 4   CPLTLLACPLTLFTCPLTPFTCP 26


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 CVSQNTGTCPESSCACPETSCACPETSC 230
           CVS      P  + ACP  + AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 129 CKLY*TCVSQNTGTCPESSCACPETSC 209
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,906
Number of Sequences: 59808
Number of extensions: 108325
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)