Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060635.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.4  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.9  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   7.8  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 617 HLHNYVHDC*KLRKFDYKFRLCIHHGTLIILATCKFKVPASI*ERASYFS 468
           H+ NY++DC +L+  D K   CI + +L +    KF     + +   Y S
Sbjct: 599 HILNYLNDCKRLQDMD-KLIPCIEYQSLDLDFITKFSRSKGLFDSLCYVS 647


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 292 CCYYSHTVAF-SNSPNFREN*FFY 360
           CCY   TV+  SN+PN     FFY
Sbjct: 25  CCYMYDTVSLVSNAPNIYSIPFFY 48


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 76  VQTCMKINFYILPNAVRDGTRS 141
           VQT  K +F  LP+A+   TRS
Sbjct: 196 VQTSFKSSFTFLPSAINTATRS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,816
Number of Sequences: 5004
Number of extensions: 51334
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)