Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060635.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_21261| Best HMM Match : APSES (HMM E-Value=2.3)                     28   6.2  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_54814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 12  IVITSTCINIILGFHVNRLRKCSNVY 89
           +VI S CIN +LGF     RKC N+Y
Sbjct: 199 LVIISPCINRLLGF---IFRKCMNIY 221


>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 451 TRGLITHNKCKNKIYKKNTISTVNLWDTK*YK 356
           T+G+IT  K K+K YKK  +S    + +K YK
Sbjct: 255 TKGIITSIKLKDKFYKKYLVSRSEYYHSK-YK 285


>SB_21261| Best HMM Match : APSES (HMM E-Value=2.3)
          Length = 342

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 658 TDCRYYINHERLDVIYIIMYMTVENYENLIIS 563
           TD + YINH+R+D+ Y      VE  + L++S
Sbjct: 206 TDKKLYINHKRIDIGYANGLANVEISKPLLLS 237


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 185  QKEEKKTAANV*SR*VGEVIDLAAPGPRAFGYLGNLAVII 304
            Q+ EK    N     +G  +D  APGP AFG    L V++
Sbjct: 1409 QETEKDPGENPEEPQLGARVDEGAPGPSAFGKAIRLIVVV 1448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,323,173
Number of Sequences: 59808
Number of extensions: 366506
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)