Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060635.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   7.2  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    28   7.2  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    28   7.2  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    28   7.2  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    28   7.2  
AL023830-2|CAA19473.1|  413|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/20 (40%), Positives = 18/20 (90%)
 Frame = +3

Query: 9   GIVITSTCINIILGFHVNRL 68
           G+V+T+TCI+++  ++++RL
Sbjct: 308 GLVLTTTCIDVVGAYYIDRL 327


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = -2

Query: 610 IIMYMTVENYENLIISFAYASIMER*LFWQLASLRFQPPSEREQVIFRQGYLPTRGLITH 431
           ++M  +VE + + ++S A    M++   W+           +EQ+   + + P RGL+  
Sbjct: 366 LVMAQSVEQFRSTLLSAAKELAMDQNQ-WRERKSSIHLSHAKEQIFGPEAWYPFRGLVEE 424

Query: 430 NKCKNKIYKKNTISTV 383
            K +  IY  + +  +
Sbjct: 425 FKRRLAIYPSDYLDGI 440


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = -2

Query: 610 IIMYMTVENYENLIISFAYASIMER*LFWQLASLRFQPPSEREQVIFRQGYLPTRGLITH 431
           ++M  +VE + + ++S A    M++   W+           +EQ+   + + P RGL+  
Sbjct: 204 LVMAQSVEQFRSTLLSAAKELAMDQNQ-WRERKSSIHLSHAKEQIFGPEAWYPFRGLVEE 262

Query: 430 NKCKNKIYKKNTISTV 383
            K +  IY  + +  +
Sbjct: 263 FKRRLAIYPSDYLDGI 278


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = -2

Query: 610 IIMYMTVENYENLIISFAYASIMER*LFWQLASLRFQPPSEREQVIFRQGYLPTRGLITH 431
           ++M  +VE + + ++S A    M++   W+           +EQ+   + + P RGL+  
Sbjct: 233 LVMAQSVEQFRSTLLSAAKELAMDQNQ-WRERKSSIHLSHAKEQIFGPEAWYPFRGLVEE 291

Query: 430 NKCKNKIYKKNTISTV 383
            K +  IY  + +  +
Sbjct: 292 FKRRLAIYPSDYLDGI 307


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = -2

Query: 610 IIMYMTVENYENLIISFAYASIMER*LFWQLASLRFQPPSEREQVIFRQGYLPTRGLITH 431
           ++M  +VE + + ++S A    M++   W+           +EQ+   + + P RGL+  
Sbjct: 366 LVMAQSVEQFRSTLLSAAKELAMDQNQ-WRERKSSIHLSHAKEQIFGPEAWYPFRGLVEE 424

Query: 430 NKCKNKIYKKNTISTV 383
            K +  IY  + +  +
Sbjct: 425 FKRRLAIYPSDYLDGI 440


>AL023830-2|CAA19473.1|  413|Caenorhabditis elegans Hypothetical
           protein Y26E6A.2 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 499 PPSEREQVIFRQGYLPTRGLITHNKCKNKIYKKNTISTV 383
           PP   EQ++ R  Y   + L       N IY++N++  V
Sbjct: 143 PPEMIEQIMQRSAYKDAQSLAITCSAANNIYRQNSLKMV 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,434
Number of Sequences: 27780
Number of extensions: 288936
Number of successful extensions: 535
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)