Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060635.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01520.1 68416.m00080 universal stress protein (USP) family p...    29   2.2  
At4g11720.1 68417.m01870 hypothetical protein                          28   5.0  

>At3g01520.1 68416.m00080 universal stress protein (USP) family
           protein similar to ER6 protein (GI:5669654)
           [Lycopersicon esculentum]; contains Pfam profile
           PF00582: universal stress protein family
          Length = 175

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 115 SARCKN*FSYTFEHFLRRLT*KPKIILIHVDVI 17
           S  CK  F +T E  +R  T   KI+L+HV V+
Sbjct: 24  SISCKRAFEWTLEKIVRSNTSDFKILLLHVQVV 56


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 284 GNLAVIIHIPSRLVIPQILGKIDFFISFSVP*IHSTYSVFFVNFIFALI-MCDESTS 451
           GNL     I   L +P   G + FF  FS   I++ +   F+NF+F      DE+ S
Sbjct: 43  GNLNCSTKIVLNLAVPS--GSVRFFF-FSKTHIYTCFGFVFINFVFTCFGFVDETKS 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,875
Number of Sequences: 28952
Number of extensions: 256177
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)