Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060633.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.1  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   4.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.5  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 428 RALQRGLDLESQLMSEISPRSPAYSPP 508
           R +++  D  S L++   P +PAYSPP
Sbjct: 6   RQVKQEADSTSPLLTP--PHNPAYSPP 30


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 377 DPHFQWCHLLDLTTDRHC 324
           DP   +C  L++T   HC
Sbjct: 60  DPSADYCLFLEMTLAHHC 77


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 293 TYHVHGQVNISNDDPLLSQ 349
           ++H H  V+ +N +PLLS+
Sbjct: 56  SFHDHVSVSNTNTEPLLSE 74


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/35 (22%), Positives = 13/35 (37%)
 Frame = -2

Query: 464 VVTQDLNLAAEPSAQLSPTQCYSGTAEKHDPHFQW 360
           ++ +D+N A      +     Y    E   PH  W
Sbjct: 1   MIDKDMNSACMRGGSVRTLNNYQQVMEPRSPHTAW 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,133
Number of Sequences: 336
Number of extensions: 1679
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)