Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060633.seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 1.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 2.5
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 2.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 2.5
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 27 3.4
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 26 4.4
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 7.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPT 167
P F Q QPT F QP F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 111 QPTVFKQSQPTVFKQSQPTVF 173
QPT F Q QPT F QP F
Sbjct: 126 QPTGFVQPQPTGFMSQQPASF 146
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 DPLLSQEDDTIESVDRASQQYQNSIASETAAQR---ALQRGLDLESQLMS 472
DP L Q+ ++ +A+QQ A + AAQ+ A Q+ ++E Q M+
Sbjct: 326 DPTLDQQLAAQQAAQQAAQQQAELAAQQAAAQQAQLAAQQAAEMERQRMA 375
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 427 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 275
LRSC +VL IH G I T +R+V A+ L +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 296 YHVHGQVNISNDDPLLSQEDDTIESVD 376
+H G S DP+L + DT++S++
Sbjct: 351 FHTSGSSKFSEQDPILIEAKDTLDSLE 377
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 427 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 275
LRSC +VL IH G I T +R+V A+ L +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 163 GCDCLNTVGCDCLKTVGCDCL 101
GC+C + GCD C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 489 DLGEISLISCDSRSKPRC 436
DLG IS+IS DS++ RC
Sbjct: 620 DLGAISMISSDSQAMGRC 637
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 105 QSQPTVFKQSQPTVFKQSQPTVF 173
Q QPT F Q QPT F + Q T F
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGF 332
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +2
Query: 386 QQYQNSIASETAAQRALQRGLDLESQLMSEISPRSPAYSPPIRRMTYYHSSPDLFD 553
Q Y+ + +R Q+ + QL ++S A +PP R ++ + FD
Sbjct: 282 QSYEFDYMFDWTLKRKTQQDQQHQQQLQQQLSATPQAINPPPERSSFRNYQKQNFD 337
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 239 DYRKRHEPLTRTYHSQGVTYHVHGQVNISN 328
+ +KR+E L+ Y+S YH H + I N
Sbjct: 725 ELKKRYEKLSDRYNSLTPGYHKHKRQEIKN 754
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,988
Number of Sequences: 5004
Number of extensions: 28331
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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