Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060633.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016...    29   2.6  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   6.0  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   8.0  
08_02_1027 + 23749400-23750698                                         28   8.0  
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    28   8.0  

>04_04_0503 -
           25701050-25701343,25701431-25701528,25701629-25701689,
           25701772-25701842,25701922-25702048,25702160-25702244,
           25702346-25702409,25702732-25702793,25703214-25703284,
           25703700-25703795,25703960-25704108,25704196-25704265,
           25704483-25704523,25704668-25704743
          Length = 454

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 320 ISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ-RGLDLESQLMSEISPRSPA 496
           +S+  P      DT    +R S+ + +S +  +AAQRALQ  G +L S  +S+ + +S  
Sbjct: 381 VSSSKPNCGDPSDT----NRTSRLFSSSSSRPSAAQRALQSAGAELRSSSLSK-TRKSSR 435

Query: 497 YSPPIRRMTYYHSSPD 544
             P IR       S D
Sbjct: 436 DDPTIRSFEMLSLSAD 451


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 446 NLAAEPSAQLSPTQCYSGTAEKHDPH 369
           N+AA  +AQ+ PTQC  G      PH
Sbjct: 600 NVAAVKAAQIVPTQCTDGLRSFGSPH 625


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 69   LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPT 167
            +  +   P V K++ P V  ++QPT   ++QPT
Sbjct: 1426 IVKVEAQPVVKKETWPVVKMETQPTANVEAQPT 1458


>08_02_1027 + 23749400-23750698
          Length = 432

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +2

Query: 341 LSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEISPRSPAYSPP 508
           +S++++T++S+    Q Y++   SE+AAQ ++    D+   + S  S ++ A + P
Sbjct: 332 ISEKENTLQSI---IQDYESLKVSESAAQSSIGELKDMIDAMFSSESTKTSAEASP 384


>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 347 QEDDTIESVDRASQQYQNSIA----SETAAQRALQRGLDLESQLMSEISPRSPAYSPPIR 514
           +ED T    D +SQ  +NS A    S T +   L R     ++++S  SP S A+  P+R
Sbjct: 290 REDKTESGSDVSSQTSENSKAATRPSRTLSSPVLHRS-SSPNKVLSAASPASTAFQSPLR 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,398,144
Number of Sequences: 37544
Number of extensions: 196751
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)