Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060633.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 31 0.66
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 31 1.2
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 30 1.5
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 29 2.7
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.5
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 29 4.7
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_20227| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41221| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 28 8.1
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/36 (27%), Positives = 30/36 (83%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++++ S+P +++ S+P++F+ S+P++++
Sbjct: 576 IYELSK-PSIYELSKPFMYELSKPSIFELSKPSIYE 610
Score = 33.5 bits (73), Expect = 0.16
Identities = 9/36 (25%), Positives = 30/36 (83%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++F+ S+P++++ +P++++ S+P++++
Sbjct: 592 MYELSK-PSIFELSKPSIYELLEPSIYELSKPSIYE 626
Score = 33.1 bits (72), Expect = 0.22
Identities = 9/36 (25%), Positives = 30/36 (83%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y++ + P++++ S+P++++ S+P++ + S+P++F+
Sbjct: 488 IYDVGK-PSIYELSKPSIYELSKPSIHELSKPSIFE 522
Score = 32.7 bits (71), Expect = 0.29
Identities = 10/36 (27%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++++ S+P++ + S+P++F+ S+P +++
Sbjct: 496 IYELSK-PSIYELSKPSIHELSKPSIFELSKPFIYE 530
Score = 32.7 bits (71), Expect = 0.29
Identities = 10/36 (27%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++ + S+P++F+ S+P +++ S+P++++
Sbjct: 504 IYELSK-PSIHELSKPSIFELSKPFIYEVSKPSIYE 538
Score = 32.7 bits (71), Expect = 0.29
Identities = 8/29 (27%), Positives = 25/29 (86%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
P++++ S+P++++ S+P++++ S+P ++K
Sbjct: 614 PSIYELSKPSIYELSKPSIYELSKPPIYK 642
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/36 (25%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P +++ S+P++F+ S+P++++ +P++++
Sbjct: 584 IYELSK-PFMYELSKPSIFELSKPSIYELLEPSIYE 618
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++++ S+P++++ S+P ++K +P +++
Sbjct: 616 IYELSK-PSIYELSKPSIYELSKPPIYKLIKPFIYE 650
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/36 (27%), Positives = 26/36 (72%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
L N R P+V++ S+P++++ S+P ++ +P++++
Sbjct: 463 LENGFRQPSVYEVSKPSIYEISKPYIYDVGKPSIYE 498
Score = 31.1 bits (67), Expect = 0.87
Identities = 8/29 (27%), Positives = 25/29 (86%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
P++++ S+P++++ S+P +++ S+P++F+
Sbjct: 574 PSIYELSKPSIYELSKPFMYELSKPSIFE 602
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/36 (30%), Positives = 28/36 (77%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P+VF+ +P++ + S+P++F+ S+P +++
Sbjct: 672 IYELSK-PSVFELIKPSINELSKPSIFELSKPFIYE 706
Score = 30.7 bits (66), Expect = 1.2
Identities = 7/36 (19%), Positives = 30/36 (83%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
++ +S+ P++++ +P++++ S+P++++ S+P++++
Sbjct: 600 IFELSK-PSIYELLEPSIYELSKPSIYELSKPSIYE 634
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y + + P +++ S+P++++ +P++++ S+P+VF+
Sbjct: 648 IYEVIK-PFIYEVSKPSIYELLEPSIYELSKPSVFE 682
Score = 30.3 bits (65), Expect = 1.5
Identities = 8/36 (22%), Positives = 28/36 (77%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++++ S+P ++ +P++++ S+P++++
Sbjct: 472 VYEVSK-PSIYEISKPYIYDVGKPSIYELSKPSIYE 506
Score = 30.3 bits (65), Expect = 1.5
Identities = 8/36 (22%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
++ +S+ P++F+ S+P +++ S+P++++ +P++++
Sbjct: 512 IHELSK-PSIFELSKPFIYEVSKPSIYELLEPSIYE 546
Score = 30.3 bits (65), Expect = 1.5
Identities = 8/36 (22%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
+Y +S+ P++++ +P++++ S+P++++ S+P +++
Sbjct: 560 IYELSK-PSIYELLEPSIYELSKPSIYELSKPFMYE 594
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/34 (26%), Positives = 26/34 (76%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTV 170
+Y IS+ P ++ +P++++ S+P++++ S+P++
Sbjct: 480 IYEISK-PYIYDVGKPSIYELSKPSIYELSKPSI 512
Score = 29.9 bits (64), Expect = 2.0
Identities = 6/29 (20%), Positives = 25/29 (86%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
P++++ S+P++++ +P++++ S+P++++
Sbjct: 558 PSIYELSKPSIYELLEPSIYELSKPSIYE 586
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/29 (31%), Positives = 24/29 (82%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
P++++ S+P+VF+ +P++ + S+P++F+
Sbjct: 670 PSIYELSKPSVFELIKPSINELSKPSIFE 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 7/36 (19%), Positives = 29/36 (80%)
Frame = +3
Query: 69 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
++ +S+ P +++ S+P++++ +P++++ S+P++++
Sbjct: 520 IFELSK-PFIYEVSKPSIYELLEPSIYELSKPSIYE 554
Score = 29.5 bits (63), Expect = 2.7
Identities = 6/29 (20%), Positives = 25/29 (86%)
Frame = +3
Query: 90 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
P++++ S+P++++ +P++++ S+P++++
Sbjct: 542 PSIYELSKPSIYELIKPSIYELSKPSIYE 570
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 31.5 bits (68), Expect = 0.66
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +2
Query: 254 HEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQ-NSIASETAAQR 430
H+ +TR Y + VT + + +N P+ D T++ +Q + I + R
Sbjct: 407 HDTVTRNYDT--VTGQLRHE--FANSSPVEGISDGTLQMTFLELRQITPDRIVTSHGRVR 462
Query: 431 ALQRGLDLESQLMSEISPRSPAYSPPIRRMTYYHSSP 541
A D E L S+++ R P Y PP R +H +P
Sbjct: 463 APLSWTDYECALRSKLALRQPPY-PPQERYISHHGNP 498
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 218 CQRRQRADYRKRHEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQED 355
C+ R D HE + TY +Q T V +N D PL ED
Sbjct: 230 CKEPHRLDTLPAHEAICTTYIAQPATTTVREILNAGKDTPLSQVED 275
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 218 CQRRQRADYRKRHEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQED 355
C+ R D HE + TY +Q VT V +N D PL E+
Sbjct: 104 CKEPHRLDTLAAHEAIYTTYIAQPVTTTVREILNAGKDTPLSQVEE 149
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 78 ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVF 173
+++SP +F PT+F PT+ PT+F
Sbjct: 772 VTQSPTLFVTQSPTLFVTQSPTLCVTQSPTLF 803
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 218 CQRRQRADYRKRHEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQED 355
C+ +R D HE + TY +Q T V +N D PL E+
Sbjct: 230 CKEPRRLDNLAAHEAIYTTYIAQPATTTVREILNAGKDTPLSQVEE 275
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 308 GQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEIS 481
GQ+ DD QE + + +S YQ+ I ++ AQ A+Q +E +MS +S
Sbjct: 63 GQMWRDLDDAEKQQEYNEAVKLYHSSPAYQDWITAKGRAQAAIQAQQSMERTMMSSMS 120
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 401 SIASETAAQRALQRGLDLESQLMSE 475
SI S T+ QR + RG+ +SQL+SE
Sbjct: 2851 SIDSSTSGQREMDRGVKKKSQLLSE 2875
>SB_20227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +2
Query: 317 NISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEISPRSPA 496
+ISN D L + E +T+ ++++ ++ +I E RAL + + + ++ + SP A
Sbjct: 78 DISNSD-LFNNETNTVRTINQNNRVSPETIRDENHNNRALPKLITSDPKVKLKPSPPPVA 136
Query: 497 YSPP 508
PP
Sbjct: 137 PRPP 140
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 515 DG*VDYKRETLGKFHSSVVTQDLNLAAEPSAQLSPTQCYSGTAEKHD 375
DG YKR+ + K + + L E SA+ T Y KHD
Sbjct: 616 DGARKYKRDPVEKLRAELQRLGAQLQEEASARTMQTHMYDDLRRKHD 662
>SB_41221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 233 RADYRKRHEPLTRTYHSQGVTYHVHGQVNISNDDPLLS 346
R D R H+PL + + + +H+ VN +D PLLS
Sbjct: 22 RHDTRPVHDPLLKHKMTSSLHFHLSTVVNPLSDIPLLS 59
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 344 SQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEISPRSPAYSPP 508
++E DT+E + +QN++ + A S + S SPRSP+ P
Sbjct: 1072 NEEPDTLEVKSLITPSHQNNLQNAFATTTMSPTSSQSPSAVTSPTSPRSPSNPSP 1126
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 491 ETLGKFHSSVVTQD--LNLAAEPSAQLSPTQCYS 396
E LG + ++V Q+ LNLA+ +L+ TQ YS
Sbjct: 1010 ELLGNYEQAIVCQEQNLNLASHMGDRLAKTQAYS 1043
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,801
Number of Sequences: 59808
Number of extensions: 240494
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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