Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060633.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58110.1 68416.m06480 expressed protein                             28   5.0  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    27   8.8  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    27   8.8  

>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 278 HSQGVTYHVHGQVN--ISNDDPLLSQEDDTIE-SVDRASQQYQNSIASETAAQRALQRGL 448
           H  G+TYH H  +N  +  ++P   ++   ++  +D+ +   + +  S     R  ++ +
Sbjct: 546 HENGITYHSHNPINKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSV 605

Query: 449 DLESQLMSEISPRS 490
             +  LM+E+  ++
Sbjct: 606 INQQYLMNELQSKT 619


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
           P V+K   P V+K   P V   S P V+K
Sbjct: 88  PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 176
           P V+K   P V+K   P V   S P V+K
Sbjct: 88  PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,845,174
Number of Sequences: 28952
Number of extensions: 152706
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)