Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060632.seq
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 66   FIKHVVNFLKK 34
            FIKHV+ FL+K
Sbjct: 1499 FIKHVLQFLEK 1509


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 266 KSEGARSGLHGGCIKPPSQAL 328
           KSE +++  +GGC    S  L
Sbjct: 98  KSESSQAAKYGGCFSGESTVL 118


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 571 SKKGRGQRPXRLHRLWRNCGIFIMSYYHQA 482
           SKK +G  P +   L   CG     Y++ A
Sbjct: 173 SKKKKGPTPRQQEELCLVCGDRASGYHYNA 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,277
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)