Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060632.seq
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.0  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    25   9.7  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 247  QNSLGSVRLTSREGCQNQLSRYFDQKPQN 161
            +N L S++L+++EG +N+ +   D+ P N
Sbjct: 1633 KNDLSSIKLSTKEGLENEENELKDKAPPN 1661


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 135 YLHDCKILSNKMVPAYFS*M*INFIKHVVNFLKKCKETFSPT 10
           Y H  K ++   V +  S + + F+K+ V+ L +C++T   T
Sbjct: 380 YEHTHKRMTQMQVDSNLSWVEVQFLKNAVDILFQCRQTLKWT 421


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 214 REGCQN--QLSRYFDQKPQNFYSNGIM 140
           REG +   Q+ +YFD   +  YSNG++
Sbjct: 215 REGYEKMAQVQQYFDNSVREDYSNGLL 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,568
Number of Sequences: 5004
Number of extensions: 56756
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)