Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060632.seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_41861| Best HMM Match : YbgT_YccB (HMM E-Value=0.86)                29   3.4  
SB_22306| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   7.7  

>SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 416 RAELINRRGVVFHHDNVRPHTSLATQQKLRELGWEV*CIRRVVLTLHL 273
           + E++ RR   F  +  R H +L+  + L +LGWE    RR+VL L +
Sbjct: 115 KLEMVQRRAARFTLN--RCHNTLSVSEMLEQLGWESLQDRRLVLRLSM 160


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
 Frame = -3

Query: 503 YELLPPGRTIDSELYCKQLMR--LKQKIERK--------RAELINRRGVVFHHDNVRPHT 354
           +E+   GRT++SE Y K+++   +K    RK        R    N+R ++F  D    HT
Sbjct: 118 FEVRTQGRTVNSEYYIKRILEKEVKPLFSRKSNSENLTKRKLFSNKRSMLFVQDGAPAHT 177

Query: 353 SLATQ 339
           + A+Q
Sbjct: 178 AKASQ 182


>SB_41861| Best HMM Match : YbgT_YccB (HMM E-Value=0.86)
          Length = 144

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 278 ARSGLHGGCIKPPSQALLIFAEWLVMC 358
           AR G+HGG  K PSQ L I    + +C
Sbjct: 84  ARQGVHGGADKIPSQFLWIVIAMVAVC 110


>SB_22306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 241 SLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGI 143
           SLG   L   E C      YF++KP+  Y+N +
Sbjct: 76  SLGKQVLEFPEPCSTNRPEYFNEKPRQIYNNTV 108


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 302 IRRVVLTLHLQISTCFVSSEFFRQCQVNITRGLPKPIVAVF*SEAPKFL*-QWDHVPTYT 126
           I  V +  +  +   + S   F +  V+   G PK  V +  S  P  +  QW+H+P +T
Sbjct: 94  IYHVQVAANTSLGVGYRSEAVFERTDVDYATGAPK--VTIVESRTPTSIYIQWEHIPPHT 151

Query: 125 I 123
           +
Sbjct: 152 V 152


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/83 (18%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -3

Query: 620 KTDYPVMKSGSCTTRTFEKRSWSKAXQASQTVAKLWHFHYELLPPGRTIDS---ELYCKQ 450
           ++D+P ++SG+   ++    S++++    +T ++ +HF  + +      ++   +L  + 
Sbjct: 242 ESDHPSLRSGNDLDQSRRSSSFNESRSIDETFSEEFHFIVDYIGSANISEAQSVQLLLET 301

Query: 449 LMRL-KQKIERKRAELINRRGVV 384
           + R+ KQ++   R + + R G++
Sbjct: 302 IKRVKKQQLRTIRVDFVIREGML 324


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 455  KQLMRLKQKIERKRAELINRR 393
            KQ++ L+ +I+R+RAEL NR+
Sbjct: 4098 KQIINLQDQIKRERAELANRQ 4118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,156,661
Number of Sequences: 59808
Number of extensions: 428543
Number of successful extensions: 1004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)