Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060632.seq
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 60 1e-09
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 60 1e-09
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 60 1e-09
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 55 5e-08
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 32 0.41
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 32 0.41
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.41
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 32 0.41
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 32 0.41
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 32 0.41
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.96
AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical... 29 2.2
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 28 5.1
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 28 5.1
AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical ... 28 6.8
AF039045-12|ABJ99097.1| 272|Caenorhabditis elegans Serpentine r... 28 6.8
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = -3
Query: 506 HYELLPPGRTIDSELYCKQLMRLKQKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLR 327
H+ELLP +TI ++ YC QL R+ +K K +L F HDN RPH + T QKL+
Sbjct: 204 HWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLY------FLHDNARPHVAKKTFQKLQ 257
Query: 326 ELGWEV 309
+LGW V
Sbjct: 258 DLGWTV 263
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -1
Query: 253 SLQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
SL + + + E + +LS +F + +F+S GIM LP++ Q +++ NG
Sbjct: 283 SLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNG 334
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 309 LMHPPCSPDLAPSDFHLF 256
L HPP SPDLAP+D+HLF
Sbjct: 264 LPHPPYSPDLAPTDYHLF 281
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = -3
Query: 506 HYELLPPGRTIDSELYCKQLMRLKQKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLR 327
H+ELLP +TI ++ YC QL R+ +K K +L F HDN RPH + T QKL+
Sbjct: 179 HWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLY------FLHDNARPHVAKKTFQKLQ 232
Query: 326 ELGWEV 309
+LGW V
Sbjct: 233 DLGWTV 238
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -1
Query: 253 SLQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
SL + + + E + +LS +F + +F+S GIM LP++ Q +++ NG
Sbjct: 258 SLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNG 309
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 309 LMHPPCSPDLAPSDFHLF 256
L HPP SPDLAP+D+HLF
Sbjct: 239 LPHPPYSPDLAPTDYHLF 256
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = -3
Query: 506 HYELLPPGRTIDSELYCKQLMRLKQKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLR 327
H+ELLP +TI ++ YC QL R+ +K K +L F HDN RPH + T QKL+
Sbjct: 204 HWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLY------FLHDNARPHVAKKTFQKLQ 257
Query: 326 ELGWEV 309
+LGW V
Sbjct: 258 DLGWTV 263
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 253 SLQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQN 101
SL + + + E + +LS +F + +F+S GIM LP++ Q +++ N
Sbjct: 283 SLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTN 333
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 309 LMHPPCSPDLAPSDFHLF 256
L HPP SPDLAP+D+HLF
Sbjct: 264 LPHPPYSPDLAPTDYHLF 281
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 54.8 bits (126), Expect = 5e-08
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = -3
Query: 500 ELLPPGRTIDSELYCKQLMRL--KQKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLR 327
ELLP G TI+++LYC QL ++ ++ R R + + HDN RPHT+L T+QKL+
Sbjct: 175 ELLPDGATINADLYCIQLEKVVHAHQLHRPRGSKL-----LLLHDNARPHTALKTRQKLQ 229
Query: 326 ELGWEV 309
LG EV
Sbjct: 230 TLGIEV 235
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -1
Query: 253 SLQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNGTCI 89
SLQN L + R+ + L +F K Q FY+ GI LP R Q +I+ NG I
Sbjct: 255 SLQNHLAGQKFHDRKAVETWLDDFFASKSQEFYAEGIAQLPLRWQEVIDTNGEYI 309
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = -2
Query: 336 KIKRAWLGGLMHPPCSPDLAPSDFHLFRLFRIL*AVSG*HHERAAKT 196
K++ + L HPP SPDLAP+D+HLFR + A H +A +T
Sbjct: 227 KLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVET 273
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 218 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 288 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 288 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 218 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 218 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q +I+ NG
Sbjct: 288 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 338
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 250 LQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
L+ LG +R ++ + NQL + P + I S+P R Q I+ NG
Sbjct: 259 LERRLGGIRASNADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAFIDANG 309
>AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical
protein Y105C5A.17 protein.
Length = 337
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 159 SIAMGSCPYLHDCKILSNK 103
SI +GSCP+ DC++LS K
Sbjct: 68 SIFIGSCPFTLDCQLLSRK 86
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 228 SG*HHERAAKTNCRGILIRSPKISIAMGSCPYLHDCKILSN 106
SG H+ A C+G RS + I +C DC IL N
Sbjct: 121 SGFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRN 161
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 228 SG*HHERAAKTNCRGILIRSPKISIAMGSCPYLHDCKILSN 106
SG H+ A C+G RS + I +C DC IL N
Sbjct: 121 SGFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRN 161
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 228 SG*HHERAAKTNCRGILIRSPKISIAMGSCPYLHDCKILSN 106
SG H+ A C+G RS + I +C DC IL N
Sbjct: 121 SGFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRN 161
>AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical
protein Y43C5A.2 protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 192 NWFWQPSRDVNLTLPKEF*RDET--GGNLK-VQGQDY 293
N FW P R+ N T+P E ++ T G N++ GQ Y
Sbjct: 382 NGFWYPKRNGNCTVPDEVFKNTTMLGINMRTTSGQGY 418
>AF039045-12|ABJ99097.1| 272|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 15 protein.
Length = 272
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 368 RYHDEKPHPSC*LIPPAFSQFFALISSVVCS 460
+YH++ P S LI +F F +L+ V CS
Sbjct: 115 KYHEQSPRISIILIAVSFGMFESLVLFVFCS 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,994
Number of Sequences: 27780
Number of extensions: 333132
Number of successful extensions: 661
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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