Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060632.seq
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...   103   1e-24
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          99   4e-23
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          95   4e-22
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score =  103 bits (248), Expect = 1e-24
 Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 16/102 (15%)
 Frame = -3

Query: 566 KRSWSKAXQASQTVAKL------------WHF----HYELLPPGRTIDSELYCKQLMRLK 435
           KRSWS+  + +QT +K             W +    ++ELLPP RTI+S +Y +QL +L 
Sbjct: 165 KRSWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLN 224

Query: 434 QKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLRELGWEV 309
             +E KR EL NR+GVVFHHDN RPHTSL T+QKL ELGW+V
Sbjct: 225 NAVEEKRPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDV 266



 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = -1

Query: 253 SLQNSLGSVRLTSREGCQNQLSRYFDQKPQNFYSNGIMSLPTRLQNIIEQNG 98
           SLQNSL      + +  ++ L ++F  K Q FY  GIM LP R Q +I+QNG
Sbjct: 286 SLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNG 337



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -2

Query: 309 LMHPPCSPDLAPSDFHLFR 253
           L HPP SPDLAPSD+ LFR
Sbjct: 267 LPHPPYSPDLAPSDYFLFR 285



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 651 RK*NXN-PFLEEN*LPGDEKWIMYD 580
           +K N N PFL+   + GDEKW++Y+
Sbjct: 137 KKRNENDPFLKRL-ITGDEKWVVYN 160


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 98.7 bits (235), Expect = 4e-23
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 16/102 (15%)
 Frame = -3

Query: 566 KRSWSKAXQASQTVAK-----------LWHFH-----YELLPPGRTIDSELYCKQLMRLK 435
           KRSWS+  +++QT +K           +W  H     +ELLPP RTI+S +Y + L +L 
Sbjct: 44  KRSWSRPRESAQTTSKAGIHRKKVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLTKLN 103

Query: 434 QKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLRELGWEV 309
             IE KR EL NR+GVVFHHD+ RPHT L T+QKL ELGW+V
Sbjct: 104 NAIEEKRFELTNRKGVVFHHDDARPHTYLVTRQKLLELGWDV 145



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 657 VRRK*NXNPFLEEN*LPGDEKWIMYD 580
           ++++   +PFL+   + GDEKW++Y+
Sbjct: 15  LKKRSENDPFLKRL-ITGDEKWVVYN 39


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 95.5 bits (227), Expect = 4e-22
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 16/102 (15%)
 Frame = -3

Query: 566 KRSWSKAXQASQTVAKL------------WHF----HYELLPPGRTIDSELYCKQLMRLK 435
           KR WS+  + +QT +K             W +    ++ELL P RTI+S +Y +QL +L 
Sbjct: 43  KRWWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLN 102

Query: 434 QKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLRELGWEV 309
             +E KR EL NR+ VVFHHDN RPHTSL T+QKL ELGW+V
Sbjct: 103 NAVEEKRPELTNRKSVVFHHDNARPHTSLVTRQKLLELGWDV 144



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 651 RK*NXN-PFLEEN*LPGDEKWIM 586
           +K N N PFL+   + GDEKW++
Sbjct: 16  KKRNENDPFLKRP-ITGDEKWVV 37


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   GTRVGEKVSLHFLRKFTTCLIKFI 73
           G R GE    H L+ +TTC++K +
Sbjct: 53  GMRRGEFPDDHDLQCYTTCIMKLL 76


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 532  CEA*XAFDHDLFSNVLVVHDP 594
            C     F HD  ++ L+VH P
Sbjct: 1346 CYVENTFGHDTVTHQLIVHAP 1366


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 228 SG*HHERAAKTNCRGILIRSPKISIAMGSCPYLHDCKIL 112
           SG H+   +   C+G   RS +  I    C     C IL
Sbjct: 75  SGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSIL 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,794
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)