Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060632.seq
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai...    31   0.51 
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains...    30   1.2  
At5g24680.1 68418.m02917 expressed protein similar to unknown pr...    27   8.4  

>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 210

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 470 SELYCKQLMRLKQKIERKRAELINRRGVVFHHDNVRPHTSLA 345
           +++  +QL+RL+Q+I   +      RG+  H   +  HTS+A
Sbjct: 58  TKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVA 99


>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 620

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 482 RTIDSELYCKQLMRLKQKIERKRAELINRRGVVFHHDNVRPHTSLATQQKLRE 324
           R I+S  + KQ+  L +K E+ R  L        H++ ++ H  +  QQKL E
Sbjct: 83  RDINSSPHSKQVFDLMRKQEKTR--LAELTAETSHYEAIQAHNDIGRQQKLAE 133


>At5g24680.1 68418.m02917 expressed protein similar to unknown
           protein (pir||T38384)
          Length = 399

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 393 GCGFSS**R*TSHITSHSAKIKRAWLGGLMHPPCSPDL 280
           GCG+ +     SH+ SH  + KR   GG    P  P L
Sbjct: 129 GCGWKNIQMQCSHLLSHREEAKRVLFGGSNFVPDIPSL 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,608
Number of Sequences: 28952
Number of extensions: 305631
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)