Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060631.seq
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    70   2e-13
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.1  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   4.1  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   4.1  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
 Frame = +2

Query: 242 QEERVALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVLDQPLPXIGE---KSLXTKXLX 412
           ++ ++A++Q+  + + L+++YP  EF I++  T+GD +L + L        KSL T+ L 
Sbjct: 12  RKSKLAVIQSEIIREELEKHYPHLEFPIISRDTIGDEILSKALFEFKRQLAKSLWTRELE 71

Query: 413 DALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFK 511
             L++     +VHSLKDLP+ +PDG+VI  + K
Sbjct: 72  ALLVTNQCRILVHSLKDLPSEMPDGMVIACIPK 104


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  GDMLSQK*LNLFKKNDSNKVTSTSNLKNI 167
           GD  S    + F  ND N++TS+SNL  +
Sbjct: 106 GDTFSGSSQSNFNTNDLNQMTSSSNLSTV 134


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -3

Query: 359 LAPCRQVLSWSQF*IPFPGNFFLSYR*RNLFVQVLLALPGADVNA*FRFTVHFSFKLVKI 180
           + P  +   WS+  I F           +   + LLA P A + A  +  V FS+  V  
Sbjct: 134 IVPICEAAGWSRLKIIFVAPLLFGMAHIHHTYEFLLAYPNAYIAAALQTVVQFSYTTVFG 193

Query: 179 YITNNIF 159
           + T ++F
Sbjct: 194 WYTTHLF 200


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 153 NLKNIICYINFNKFE*KMDGETKLSIHVGSRKSE 254
           NL ++  Y+N +K   K+DG TK    +G+++ E
Sbjct: 452 NLHHLSEYLNVSKLARKVDGYTKYMHSLGTQELE 485


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 111 LFKKNDSNKVTSTSNLKNIICYINFNK 191
           LFKKN++ +  +TSN+K+    I  NK
Sbjct: 230 LFKKNNAMQNRTTSNIKSNASAIEKNK 256


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 341  VLSWSQF*IPFPGNFFLSYR*RNLFVQVLLALP 243
            +L W QF   F GN+   Y    LF  +  +LP
Sbjct: 1106 ILFWYQFYNEFDGNYIFDYTYVMLFNLLFTSLP 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,547
Number of Sequences: 5004
Number of extensions: 31602
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)