Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060631.seq
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371...    71   8e-13
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40...    28   5.5  
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707...    27   7.2  

>02_01_0513 +
           3715406-3715543,3716298-3716708,3716882-3717085,
           3717552-3717729,3717833-3717951
          Length = 349

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
 Frame = +2

Query: 242 QEERVALVQTNFVIDSLKRNYPEKE----FKIVTMTTLGDRVLDQPLPXIGEKSLXTKXL 409
           ++  +AL Q +   D LK  + E       +IV + T GD +LD+PL  IG K L TK +
Sbjct: 46  KDSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEI 105

Query: 410 XDALMSKNVDFVVHSLKDLPTTLPDGLVI 496
            DAL+   +D  VHS+KD+PT LP+G ++
Sbjct: 106 DDALLQGRIDIAVHSMKDVPTYLPEGTIL 134


>06_01_0041 +
           403634-403817,404154-404332,404431-404536,404620-404936,
           405231-405605,406199-406283,406570-408066,408575-408738
          Length = 968

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 504 TAPMTXPSGNVVGKSFXECTTKSTFLLISASXKXFVXSDFS 382
           TA    P G+ +  ++ E TTK++ +L +++ +  V   FS
Sbjct: 202 TAKSEKPDGSAISSAYQEDTTKTSSVLSASTARPLVPPGFS 242


>01_06_0670 +
           31069976-31070073,31070461-31070581,31070669-31070743,
           31070863-31071014,31071171-31071276,31071409-31071474,
           31071562-31071657,31071764-31071835,31071925-31072008,
           31072147-31072245,31072721-31072768,31072857-31072910,
           31072991-31073089,31073182-31073271,31073371-31073448,
           31073584-31073658,31073806-31073896,31074014-31074142,
           31074235-31074323
          Length = 573

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 233 RRLQEERVALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVL 358
           RR Q   ++L +   +++ L RN+PEK  +++ +T  G+R+L
Sbjct: 137 RRPQGLYISLKEKGRILELL-RNWPEKSIQVIVVTD-GERIL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,018,407
Number of Sequences: 37544
Number of extensions: 176439
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)