Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060631.seq
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)                    29   1.8  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               29   3.2  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
          Length = 978

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 413 DALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFKXXTLVMLW 535
           D +   N   V  + +D+P+  PD ++I  +F   T+++ W
Sbjct: 205 DGIGPSNPAVVAKTKEDVPSAPPDNMIIQDMFNISTIIVKW 245


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 537 YQSITRVXXLKTAPMTXPSG-NVVGKSFXECTTKSTFLLISASXKXFVXS 391
           ++  T V  +++ P++ PS  + VG+     TTK TF+  S+  + FV S
Sbjct: 796 FKGSTAVPGVRSVPVSAPSNPSTVGQMQSAGTTKITFINESSGIRQFVDS 845


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 236 RLQEERVALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVLD 361
           +L   RV +    F+   L   YP     IVT +++GDR+LD
Sbjct: 789 QLSSLRVTMSSDIFISQVLVERYPTV-LSIVTSSSIGDRLLD 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,256
Number of Sequences: 59808
Number of extensions: 221991
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)