Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060631.seq
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08280.1 68418.m00975 hydroxymethylbilane synthase / porphobi...    66   2e-11
At3g10650.1 68416.m01281 expressed protein                             29   2.0  
At4g28410.1 68417.m04067 aminotransferase-related similar to nic...    27   6.1  
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    27   8.0  

>At5g08280.1 68418.m00975 hydroxymethylbilane synthase /
           porphobilinogen deaminase, chloroplast /
           pre-uroporphyrinogen synthase identical to SP|Q43316
          Length = 382

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
 Frame = +2

Query: 254 VALVQTNFVIDSLKRNYPEK----EFKIVTMTTLGDRVLDQPLPXIGEKSLXTKXLXDAL 421
           +AL Q     + LK+ +PE        I  + T GD++L QPL  IG K L TK + +AL
Sbjct: 84  LALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEAL 143

Query: 422 MSKNVDFVVHSLKDLPTTLPDGLVI 496
           ++ ++D  VHS+KD+PT LP+  ++
Sbjct: 144 INGHIDIAVHSMKDVPTYLPEKTIL 168


>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 501  APMTXP-SGNVVGKSFXECTTKSTFLLISASXKXFVXSDFSPIXGRG*SSTLSPSVV 334
            AP + P SG V   SF   +T +TF     S    V S  +PI G   ++T SPS +
Sbjct: 1095 APNSSPNSGPVFSSSFTTSSTPTTFSF-GGSSAATVSSTTTPIFGASTNNTPSPSPI 1150


>At4g28410.1 68417.m04067 aminotransferase-related similar to
           nicotianamine aminotransferase [Hordeum vulgare subsp.
           vulgare] GI:6469090
          Length = 447

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 353 VLDQPLPXIGEKSLXTKX-LXDALMSKNVDFVVHSLKDLP 469
           +L   LP I EK+        ++++S+NVDF   +LKD+P
Sbjct: 321 ILQFALPNILEKTKKEFFEKNNSILSQNVDFAFDALKDIP 360


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 75  SVGDMLSQK*LNLFKKNDSNKVTSTSNLKNIIC 173
           S+GD++  + L+L++   S+  +S  NLK ++C
Sbjct: 594 SIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLC 626


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,391
Number of Sequences: 28952
Number of extensions: 155856
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)