Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060630.seq
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    27   0.082
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.3  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.3  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   7.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   7.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQ 359
           PI  FE +    ++ + VK  GY +P AIQ
Sbjct: 156 PITSFETSGLRPHLLENVKKSGYTKPTAIQ 185


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 249 KWVEVHNPIQYFEE 290
           KW+ ++N +QY +E
Sbjct: 106 KWIRLNNNLQYIDE 119


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 249 KWVEVHNPIQYFEE 290
           KW+ ++N +QY +E
Sbjct: 106 KWIRLNNNLQYIDE 119


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 327 SLHLVAHNQENLLLQSIE*DYEPQPTYSYLVIXSVLFDFI 208
           S  +++H   + +      +Y+     SYL+I  VLF  +
Sbjct: 119 SFDMLSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLL 158


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 327 SLHLVAHNQENLLLQSIE*DYEPQPTYSYLVIXSVLFDFI 208
           S  +++H   + +      +Y+     SYL+I  VLF  +
Sbjct: 119 SFDMLSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLL 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,315
Number of Sequences: 336
Number of extensions: 2200
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)