Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060630.seq
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    65   7e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    33   0.028
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    30   0.20 
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    29   0.60 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   5.6  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.4  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 47/136 (34%), Positives = 65/136 (47%)
 Frame = +1

Query: 121 VAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIF 300
           V  DW + +L PF K+FY  H  V  RS  EV EYR   E+ V GL       T ++  F
Sbjct: 70  VKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGF 129

Query: 301 LIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TN 480
                K  +Q   + PT  + +A P+AMSG+ +  G+  TG   K  +Y LP        
Sbjct: 130 PNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDM-VGISATG-SGKTLSYCLP-AIVHINA 186

Query: 481 QPXIXRXDGRLLWVXA 528
           QP +   DG ++ V A
Sbjct: 187 QPLLSPGDGPIVLVLA 202


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQ 359
           ++ NP++ +EEA  P  + + +K + YKEP +IQ
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 267 NPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           N +  FEE N  + + +G+   GY+ P A+Q++
Sbjct: 18  NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
           PI  F+E +    +++G+K   YKEP  IQA  W
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATW 196


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 333 PLSLHLVAHNQENL--LLQSIE 274
           PL LH+V+HN+++L   LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 270  PIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGWADSYV 386
            P+Q + E+ FP  V Q   T+G    DA+    +  +Y+
Sbjct: 1148 PLQQYAESGFPSEVDQASCTVGQDLLDAMSILRFLVAYL 1186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,408
Number of Sequences: 5004
Number of extensions: 35575
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)