Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060630.seq
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 55 4e-08
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 54 8e-08
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 43 1e-04
08_01_0397 - 3509186-3510291,3510322-3512335 42 2e-04
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 40 0.001
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 33 0.11
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 32 0.35
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 32 0.35
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993... 29 2.5
08_02_0363 + 16238710-16240224,16240537-16240545 28 4.3
08_02_0841 - 21749599-21749978,21750409-21753367 28 5.7
04_04_0960 + 29704009-29705679 27 7.5
01_04_0011 + 15067536-15068236,15068283-15068898 27 7.5
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 54.8 bits (126), Expect = 4e-08
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Frame = +1
Query: 130 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIFLI- 306
D ++ +PFNK+FY+ P+V S EV +Y + + VSG + F +
Sbjct: 170 DHSTIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQ 229
Query: 307 MCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TNQP 486
+ N + +Q K PT + +A PI +SG+ I G+ KTG K A++LP +QP
Sbjct: 230 LMNAIAKQGYEK-PTTIQCQALPIVLSGRDI-IGIAKTG-SGKTAAFVLP-MIVHIMDQP 285
Query: 487 XIXRXDG 507
+ + +G
Sbjct: 286 ELEKEEG 292
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 54.0 bits (124), Expect = 8e-08
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P++YF+EANFPDY Q + G+ EP IQ+QGW
Sbjct: 150 DVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGW 187
Score = 51.2 bits (117), Expect = 5e-07
Identities = 40/147 (27%), Positives = 69/147 (46%)
Frame = +1
Query: 88 GKKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFI 267
G +++L+ + PD+ S L PF KNFY P V S +V +YR ++TV G
Sbjct: 95 GGRDALDSLSLPKPDFRS--LIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVP 152
Query: 268 ILFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAY 447
++ F C + + PT + + P+A+ G+ + G+ +TG K +Y
Sbjct: 153 KPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDM-IGIAQTG-SGKTLSY 210
Query: 448 ILPXXCAP*TNQPXIXRXDGRLLWVXA 528
+LP QP + + DG ++ + A
Sbjct: 211 LLPGLVHV-GAQPRLEQGDGPIVLILA 236
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 43.2 bits (97), Expect = 1e-04
Identities = 38/131 (29%), Positives = 56/131 (42%)
Frame = +1
Query: 136 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIFLIMCN 315
D L F KNFY P+V + EVE YR E+TV G + F
Sbjct: 44 DLDGLPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVL 103
Query: 316 KV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TNQPXIX 495
+ + PT + + P+A+ G+ + G+ +TG K AY+LP QP +
Sbjct: 104 QEITKAGFVEPTPIQSQGWPMALRGRDL-IGIAETG-SGKTLAYLLPAIVHV-NAQPILA 160
Query: 496 RXDGRLLWVXA 528
DG ++ V A
Sbjct: 161 PGDGPIVLVLA 171
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P++ F + FP+YV Q + G+ EP IQ+QGW
Sbjct: 85 DVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGW 122
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 42.3 bits (95), Expect = 2e-04
Identities = 36/126 (28%), Positives = 52/126 (41%)
Frame = +1
Query: 130 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIFLIM 309
D + QPF KNFY + K + EV YR E+ V G T +
Sbjct: 375 DHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSK 434
Query: 310 CNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TNQPX 489
++ + P + +A PI MSG+ G+ KTG K A++LP +QP
Sbjct: 435 LLDTIKKLGFEKPMSIQAQALPIIMSGRDC-IGIAKTG-SGKTLAFVLP-MLRHVKDQPA 491
Query: 490 IXRXDG 507
+ DG
Sbjct: 492 VVPGDG 497
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 39.9 bits (89), Expect = 0.001
Identities = 39/139 (28%), Positives = 56/139 (40%)
Frame = +1
Query: 91 KKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFII 270
KK +E V D + QPF KN Y + + EV YR N E+ V G
Sbjct: 225 KKTKVEKLAIV--DHSKIEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPK 282
Query: 271 LFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYI 450
T + ++ + P + +A PI MSG+ G+ KTG K A++
Sbjct: 283 PIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDC-IGIAKTG-SGKTLAFV 340
Query: 451 LPXXCAP*TNQPXIXRXDG 507
LP +QP + DG
Sbjct: 341 LP-MLRHVKDQPPVVPGDG 358
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
PI FE FP + + ++ G+ P IQAQ W
Sbjct: 148 PITSFETGGFPPEILKEIQRAGFSSPTPIQAQSW 181
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
P FE FP + Q + G+ P IQAQ W
Sbjct: 602 PFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTW 635
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
E P F+ FP + + V+ G+ P IQAQ W
Sbjct: 174 EAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSW 211
>10_06_0037 +
9932967-9933112,9934815-9934822,9935213-9935349,
9935761-9936438
Length = 322
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 NPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGWADSYVW 389
+P+ EE+N +YVQ + M E D ++ G D+ W
Sbjct: 67 DPVSENEESNGDEYVQSDDEVMENIEGDEVEVSGDCDAMKW 107
>08_02_0363 + 16238710-16240224,16240537-16240545
Length = 507
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 389 PDIAIGPALSLNSVGFFVTHCLYTLLHIIRKI 294
P +A+ L++ ++ F V +YT+L ++RK+
Sbjct: 475 PCVAVASVLAIIAIAFGVLQAVYTVLKLVRKM 506
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 201 SFENCRMWIIKVFVERLE*NRIPIWGDACSDLQRILF 91
SFE+C++ + + ++ N IP W CS L ++ F
Sbjct: 253 SFEDCKLEVFILSFNQIS-NEIPSWLGNCSSLTQLAF 288
>04_04_0960 + 29704009-29705679
Length = 556
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 240 GNCKWVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGWADS 380
G W ++ P +F + Y+Q V G +E D + +GW +S
Sbjct: 351 GGGGWDKLFQPFNFF--GAYKSYLQVDVTVTGGEEDDLREWKGWVES 395
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 128 QIGILFHSNLSTKTFMIHILQFSKDHHMKSKST 226
++ ++ NLS K + +L+ +K+ H+ SKST
Sbjct: 188 EVVVIVGCNLSGKEVALELLRVAKEVHLSSKST 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,878
Number of Sequences: 37544
Number of extensions: 223206
Number of successful extensions: 429
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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