Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060630.seq
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  41   6e-04
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.013
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  33   0.12 
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            31   0.47 
SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 40/136 (29%), Positives = 65/136 (47%)
 Frame = +1

Query: 121 VAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIF 300
           + P+   +  +PFNKNFY+ HP + K+S  E+++ R    + VSG        +     F
Sbjct: 465 IVPEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGF 524

Query: 301 LIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TN 480
                   R+     PT  + +A PIA+SG+ I  G+ KTG   K  A++ P       +
Sbjct: 525 DEQMMASIRKLEYTQPTQIQCQALPIALSGRDI-IGIAKTG-SGKTAAFLWP-ALVHIMD 581

Query: 481 QPXIXRXDGRLLWVXA 528
           QP +   DG ++ + A
Sbjct: 582 QPELQVGDGPIVLICA 597


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +3

Query: 261 VHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           V  P+  FEE+ FPDY+Q   K  G+ EP  IQAQ
Sbjct: 78  VPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +1

Query: 130 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHE-VTVSGLRFIILFNTLKKQIFLI 306
           D  +V  QPF K+FY   P + K +P E +E+R + E + V G        T  +    +
Sbjct: 55  DHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQL 114

Query: 307 MCNKV*RQWVTKNPTLFKLKAGPIAMSGK 393
               V ++   + PT  + +A P+ MSG+
Sbjct: 115 KILDVLKKNSYEKPTPIQAQAIPVIMSGR 143


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           PI+ ++EA  PD + + V  +GYK+P  IQ Q
Sbjct: 99  PIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQ 130


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 249 KWVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           K  +V +P++ F    E   FPDY+   V+  GY  P  IQ Q
Sbjct: 150 KGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQ 192


>SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 273 IQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           I Y ++A  P ++QQ  + +GYKEPD + ++
Sbjct: 6   ISYTKQAT-PAFIQQFKERVGYKEPDNVDSK 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,223
Number of Sequences: 59808
Number of extensions: 249530
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)