Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060630.seq
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    52   4e-07
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    40   0.001
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    31   0.42 
AF000192-2|AAB52888.1|  196|Caenorhabditis elegans Rab family pr...    27   9.0  
AB162902-1|BAD32698.1|  196|Caenorhabditis elegans Rab37 protein.      27   9.0  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
 Frame = +1

Query: 130 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGL---RFIILFN--TLKKQ 294
           DW + +L P  K+FY  +  V +R  YE++++   ++VT+ G    R +  FN   L  Q
Sbjct: 81  DWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQ 140

Query: 295 IFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILP 456
           I  ++  K       + PT+ +  + PIAMSG+ I   + KTG   K  A++LP
Sbjct: 141 IHELLYGKF------QKPTVIQSISWPIAMSGRDI-ISIAKTG-SGKTLAFMLP 186


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 261 VHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
           V  P++ +EEA FPD V Q VK +GY EP  IQ Q
Sbjct: 296 VPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQ 330


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 30/109 (27%), Positives = 49/109 (44%)
 Frame = +1

Query: 130 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIFLIM 309
           D   +  Q FNKNFY+ H  + +    +V   +    + V GL+      +     F  +
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275

Query: 310 CNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILP 456
             +  R+   + PT  +  A P A+SG+ +  G+ KTG   K  AY+ P
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDV-LGIAKTG-SGKTAAYLWP 322


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQ 359
           +V  PI  F + +  +++++ +KT GY  P  +Q
Sbjct: 160 DVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQ 193


>AF000192-2|AAB52888.1|  196|Caenorhabditis elegans Rab family
           protein 37 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 201 SFENCRMWIIKVFVERLE*NRIPIWGDACSDLQRILFSHQILQILQIY 58
           SFENCR W+ ++     E  ++ + G+ C DL R + + +  ++ + Y
Sbjct: 90  SFENCRNWLSQIKEYGKEAVQVTLVGNKC-DLPRAVPTDEGKRLAEAY 136


>AB162902-1|BAD32698.1|  196|Caenorhabditis elegans Rab37 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 201 SFENCRMWIIKVFVERLE*NRIPIWGDACSDLQRILFSHQILQILQIY 58
           SFENCR W+ ++     E  ++ + G+ C DL R + + +  ++ + Y
Sbjct: 90  SFENCRNWLSQIKEYGKEAVQVTLVGNKC-DLPRAVPTDEGKRLAEAY 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,921,166
Number of Sequences: 27780
Number of extensions: 195623
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)