Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060630.seq
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 52 2e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 51 4e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 48 6e-06
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 48 6e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 37 0.010
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 34 0.073
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 33 0.17
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 33 0.17
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 33 0.17
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.2
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 29 2.7
At1g72270.1 68414.m08355 expressed protein 29 2.7
At1g48060.1 68414.m05358 F-box family protein contains Pfam PF00... 28 4.8
At2g42005.1 68415.m05196 amino acid transporter family protein l... 27 6.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 52.4 bits (120), Expect = 2e-07
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +1
Query: 136 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTLKKQIFL-IMC 312
D L PF KNFY P V + EVEEYR E+TV G + + F +
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 313 NKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXCAP*TNQPXI 492
+V + T+ PT + + P+AM G+ + G+ +TG K +Y+LP QP +
Sbjct: 112 EEVKKAGFTE-PTPIQSQGWPMAMKGRDL-IGIAETG-SGKTLSYLLPAIVHV-NAQPML 167
Query: 493 XRXDGRLLWVXA 528
DG ++ V A
Sbjct: 168 AHGDGPIVLVLA 179
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
++ P++ F + FPDYV + VK G+ EP IQ+QGW
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGW 130
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/134 (26%), Positives = 61/134 (45%)
Frame = +1
Query: 106 EVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFIILFNTL 285
++ A D S+ +P NK+FY+ ++ + E +YR + VSG T
Sbjct: 171 KIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTF 230
Query: 286 KKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYILPXXC 465
+ F ++ + PT + +A PI +SG+ + G+ KTG K A++LP
Sbjct: 231 EDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDV-IGIAKTG-SGKTAAFVLP-MI 287
Query: 466 AP*TNQPXIXRXDG 507
+QP + R +G
Sbjct: 288 VHIMDQPELQRDEG 301
Score = 37.5 bits (83), Expect = 0.006
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
+VH P++ FE+ F + +K Y++P AIQ Q
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQ 257
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P++ F++ANFPD + + + +G+ EP IQAQGW
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGW 196
Score = 43.6 bits (98), Expect = 9e-05
Identities = 36/147 (24%), Positives = 64/147 (43%)
Frame = +1
Query: 88 GKKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFI 267
G + E+ + P + +L F KNFY PTV + +V YR +++V G
Sbjct: 102 GGSSKRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVP 161
Query: 268 ILFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAY 447
+ F + + PT + + P+A+ G+ + G+ +TG K AY
Sbjct: 162 KPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL-IGIAETG-SGKTLAY 219
Query: 448 ILPXXCAP*TNQPXIXRXDGRLLWVXA 528
+LP + QP + + DG ++ + A
Sbjct: 220 LLPALVHV-SAQPRLGQDDGPIVLILA 245
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P++ F++ANFPD + + + +G+ EP IQAQGW
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGW 196
Score = 43.6 bits (98), Expect = 9e-05
Identities = 36/147 (24%), Positives = 64/147 (43%)
Frame = +1
Query: 88 GKKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFI 267
G + E+ + P + +L F KNFY PTV + +V YR +++V G
Sbjct: 102 GGSSKRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVP 161
Query: 268 ILFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAY 447
+ F + + PT + + P+A+ G+ + G+ +TG K AY
Sbjct: 162 KPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL-IGIAETG-SGKTLAY 219
Query: 448 ILPXXCAP*TNQPXIXRXDGRLLWVXA 528
+LP + QP + + DG ++ + A
Sbjct: 220 LLPALVHV-SAQPRLGQDDGPIVLILA 245
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 36.7 bits (81), Expect = 0.010
Identities = 39/146 (26%), Positives = 58/146 (39%)
Frame = +1
Query: 91 KKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFII 270
KK E + V D + +PF KNFY + + + EV YR E+ V G
Sbjct: 469 KKTKAEKLSLV--DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPR 526
Query: 271 LFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYI 450
+ ++ + P + +A PI MSG+ GV KTG K ++
Sbjct: 527 PIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDC-IGVAKTG-SGKTLGFV 584
Query: 451 LPXXCAP*TNQPXIXRXDGRLLWVXA 528
LP +QP + DG + V A
Sbjct: 585 LP-MLRHIKDQPPVEAGDGPIGLVMA 609
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 33.9 bits (74), Expect = 0.073
Identities = 38/146 (26%), Positives = 57/146 (39%)
Frame = +1
Query: 91 KKNSLEVRTCVAPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRXNHEVTVSGLRFII 270
KK E + V D + +PF KNFY + + + V YR E+ V G
Sbjct: 336 KKTKAEKLSLV--DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPR 393
Query: 271 LFNTLKKQIFLIMCNKV*RQWVTKNPTLFKLKAGPIAMSGKXI*FGVXKTGFRQKRXAYI 450
+ ++ + P + +A PI MSG+ GV KTG K ++
Sbjct: 394 PIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDC-IGVAKTG-SGKTLGFV 451
Query: 451 LPXXCAP*TNQPXIXRXDGRLLWVXA 528
LP +QP + DG + V A
Sbjct: 452 LP-MLRHIKDQPPVEAGDGPIGLVMA 476
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQ 365
+V PIQ++ + + +K + Y++P IQAQ
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQ 425
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P+ FE FP + + V + G+ P IQAQ W
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSW 189
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P+ FE FP + + V + G+ P IQAQ W
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSW 189
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQGW 371
+V P+ FE FP + + V + G+ P IQAQ W
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSW 189
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 270 PIQYFEEANFPDYVQQGVKTMGYKEPDAIQ 359
PI+ F++ D V +GV GYK+P IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 258 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPDAIQAQG 368
++ PI+ F++ FP V +K G +P IQ QG
Sbjct: 140 DIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -3
Query: 483 LVCLRCTXXWQDVGXTFLPEPRFXYAKLNXF---PRHSYRPSLELE*RRVLCNPLSLH 319
L+ + T +D G F E ++ LN + P ++RPSLE + R++L N + LH
Sbjct: 409 LLMVESTSDLEDQGNEFFQEHKYADDALNSYLKVPVMAFRPSLEAKLRQLLHN-ICLH 465
>At1g48060.1 68414.m05358 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 353
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 115 TCVAPDWDSVSLQPFNKNFYDPHPTVL 195
+CVA W S++ P+ N ++ P +L
Sbjct: 35 SCVAKHWSSITTAPYFTNSFETRPNLL 61
>At2g42005.1 68415.m05196 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 413
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 365 LSLNSVGFFVTHCLYTLLHIIRKI 294
L+L SV + HC+ L+HI RK+
Sbjct: 58 LTLFSVAALINHCMMLLVHIRRKL 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,802
Number of Sequences: 28952
Number of extensions: 182707
Number of successful extensions: 425
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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