Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060629.seq
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 31  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 144
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 31  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 144
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 31  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 144
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 31  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 144
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 98  RHHNEWLQNFE*KFERKSSKNLYN 27
           RHH +W  + +  FE+  +   YN
Sbjct: 71  RHHGQWNYSPDNHFEQYPNPTYYN 94


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 371 YCTRLVFQYSAV 336
           YCT L++ Y+A+
Sbjct: 54  YCTHLIYGYAAI 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,610
Number of Sequences: 336
Number of extensions: 2897
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)