Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060629.seq
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0827 + 32260313-32260525,32261862-32262716                       30   1.8  
08_02_0786 + 21198247-21198921                                         29   4.1  
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178...    29   4.1  
02_04_0078 + 19507705-19508169                                         29   4.1  
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826...    28   7.1  
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520...    28   7.1  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   9.4  

>01_06_0827 + 32260313-32260525,32261862-32262716
          Length = 355

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 458 ERESNPMEALCRSGCGFTAIPPQTDFAQFCFKE 556
           ++ S     LC SGCGF   P   D    C+++
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQ 227


>08_02_0786 + 21198247-21198921
          Length = 224

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 482 ALCRSGCGFTAIPPQTDFAQFCFKEALK 565
           ALC SGCGF       +    C+++ LK
Sbjct: 79  ALCSSGCGFFGSKETNNMCSKCYRDHLK 106


>03_03_0277 +
           16116017-16117424,16117461-16117660,16117739-16117816,
           16118381-16118533,16118969-16119280,16119390-16119563,
           16120411-16120498,16120598-16120611
          Length = 808

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -3

Query: 344 SAVITMRTNLLSNVGQVTSG-LCSAQQFSLL*YTIATSVSGPLKDTLLLKKRVSNQTNVF 168
           SA   M   L+SNV  + +G L   ++      +  T   G  K T +  KR+ N   ++
Sbjct: 548 SANTVMGRELISNVQVINNGDLEDLREIGS--GSFGTVFHGRWKGTDVAIKRIKNSCFMY 605

Query: 167 PSAQSLQLTNKRHHVCAVVVSIHRHHN 87
           PS+Q+ +L  +     A++  +H H N
Sbjct: 606 PSSQADKLITEFWREAAIISKLH-HPN 631


>02_04_0078 + 19507705-19508169
          Length = 154

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 485 LCRSGCGFTAIPPQTDFAQFCFKEALKKKTTA 580
           LC + CGF   P   D    C+++   +++TA
Sbjct: 14  LCANNCGFFGSPATLDLCSKCYRDRQGRESTA 45


>12_02_0474 +
           19482150-19482152,19482205-19482336,19482513-19482602,
           19482649-19482708,19482959-19483058,19483137-19483234,
           19483351-19483525,19484167-19484270
          Length = 253

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 438 HFNNKFQTLH*CLTSDCTKSTL 373
           HF+  + TLH C TSDC K  L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186


>04_04_0383 -
           24851496-24851681,24851785-24851882,24851964-24852063,
           24852741-24852899
          Length = 180

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 438 HFNNKFQTLH*CLTSDCTKSTL 373
           HF+  + TLH C TSDC K  L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 225 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 109
           T+E   +++  SFE NK LS+  +PS+  + +    G S
Sbjct: 32  TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,861
Number of Sequences: 37544
Number of extensions: 293440
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)