Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060629.seq
         (634 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   6.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.1  
AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding pr...    23   8.1  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 298 WPTFESKLVRIVITAEYWKTKRVQY*STFSAI 393
           W T ESK V IV+       +R+++  T   +
Sbjct: 46  WVTDESKTVAIVVNGNRLPIQRIRHRQTLGVV 77


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 146  AEGTAHLERHLFGSKLSFSTTVCPSK 223
            AE T        GSKLSF+ T+ PS+
Sbjct: 1434 AEMTIDTTHTADGSKLSFNITIKPSE 1459


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 252  VYDRYFCVRTFEGHTVVEKESFEPNK 175
            V DR+  ++   GH + E+E + P++
Sbjct: 2084 VIDRFVRIQQENGHRITEEEYYLPDE 2109


>AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP24 protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 393 DCTKSTLILHSFSFPVLRGDHYAH*FTFKC 304
           +C K T IL   +F VL GD        KC
Sbjct: 62  ECVKETGILPKNAFRVLSGDFSVDTMKAKC 91


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,853
Number of Sequences: 2352
Number of extensions: 11913
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61886940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)