Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060629.seq
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel ...    29   2.1  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   2.1  
AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.      29   2.1  
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF002198-4|AAF99939.4|  339|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical
           protein F22D6.2 protein.
          Length = 189

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 455 MERESNPMEAL--CRSGCGFTAIPPQTDFAQFCFKEALKKK 571
           ME E    +    CR+GCGF        +   CFK  LK++
Sbjct: 1   MENEQQQAQTAPSCRAGCGFFGASATEGYCSQCFKNTLKRQ 41


>U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform a protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -1

Query: 136 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 14
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -1

Query: 136 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 14
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -1

Query: 136 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 14
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 200 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQN 72
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQN
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQN 113


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
           protein C01B9.1b protein.
          Length = 1671

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 270 AVFLVVVYDRYFCVRTFEGHTVVEKES--FEPNKCLSKCAVPSAHK 139
           +VFLV++ D      T++  T +EK++  F+  K +S C+V S ++
Sbjct: 334 SVFLVILRDSIMFQLTYQPKTSLEKQNAIFDYKKQMSGCSVNSENR 379


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
           protein C01B9.1a protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 270 AVFLVVVYDRYFCVRTFEGHTVVEKES--FEPNKCLSKCAVPSAHK 139
           +VFLV++ D      T++  T +EK++  F+  K +S C+V S ++
Sbjct: 264 SVFLVILRDSIMFQLTYQPKTSLEKQNAIFDYKKQMSGCSVNSENR 309


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 166 GKTFVWFETLFFNNSVSFKGPDTEVAIVYYNKENCCAEHKPDVTW 300
           G+   W+ + F +   SF  P + +   Y++K  CC     + TW
Sbjct: 226 GRCSSWWLSGFCSPDPSFGKPCSTILGDYFSKRFCCKSDPMECTW 270


>AF002198-4|AAF99939.4|  339|Caenorhabditis elegans Hypothetical
           protein F35F10.4 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 164 LERHLFGSKLSFSTTVCPSKVLTQK*RSYTTTRKTAVPNISQT 292
           +E +   + + FSTT  P  + T+K  + T T     P+IS T
Sbjct: 91  IEVYWKNTTMDFSTTTTPGSIATKKSPTSTITEPHHQPDISST 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,752
Number of Sequences: 27780
Number of extensions: 275518
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)