Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060629.seq
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c...    29   3.4  
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    28   4.5  
At5g60610.1 68418.m07606 F-box family protein contains F-box dom...    28   5.9  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    28   5.9  
At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c...    27   7.8  
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c...    27   7.8  

>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 160

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 455 MERESNPMEALCRSGCGFTAIPPQTDFAQFCFKEAL 562
           +E  +     LC + CG TA P   +  Q CF  +L
Sbjct: 15  LETLTTTTTTLCTNNCGVTANPATNNMCQKCFNASL 50


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UBS4 DnaJ
           homolog subfamily B member 11 precursor Homo sapiens;
           contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  CISFWMIFFRIFIQSFVTIHCDAGGC 106
           C++  ++F  +F+QS   I+C A  C
Sbjct: 10  CLALILLFLSLFVQSSTAIYCGAEDC 35


>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 503 GFTAIPPQTDFAQFCFKEALKKKTTA 580
           G+TA P + DF  F FK+A   KT++
Sbjct: 360 GYTARPEERDFLSFIFKKARCLKTSS 385


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 536 QSPSVEGLP*NRSLIGKALP*DLIHAPLFHYNFTLTTSF 420
           ++PS+EG   ++ ++ + +P  L   P+ H N  LTT+F
Sbjct: 86  RNPSIEGS--HKQVLSRPMPMSLDWPPMVHSNCGLTTAF 122


>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 446 SGTMERESNPMEALCRSGCGFTAIPPQTDFAQFCFK 553
           S T  + S P   LC  GCGF   P   D    C++
Sbjct: 10  SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYR 43


>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 446 SGTMERESNPMEALCRSGCGFTAIPPQTDFAQFCFK 553
           S T  + S P   LC  GCGF   P   D    C++
Sbjct: 10  SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYR 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,857
Number of Sequences: 28952
Number of extensions: 246873
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)