Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060628.seq
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_A0CXS9 Cluster: Chromosome undetermined scaffold_30, wh...    33   5.3  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 21/26 (80%), Positives = 21/26 (80%)
 Frame = +3

Query: 96  LKLENGWTDLGNLGLELFVEVQRRFK 173
           LKLENGWTDL N GLEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_A0CXS9 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 97

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 173 KVNKYENAR-NDIKITILFFFRYVPRRTVPF 262
           +V K EN R NDIKI IL+FF   P R+ P+
Sbjct: 38  RVCKVENVRINDIKIKILWFFLECPERSGPY 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,801,439
Number of Sequences: 1657284
Number of extensions: 8760820
Number of successful extensions: 13781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13778
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)