Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060628.seq
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.023
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.6  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 0.023
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 597 LKYLTYDXLHIQSLYXFKKRW*VSTIKTMHKCVPIFSLCLIY 472
           L Y T   L +  +Y F   + + TI  +  CV I  LC+ Y
Sbjct: 199 LDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYY 240


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 252 VRRGTYRKKNKIVIFISFRAFSYLF 178
           V++ +Y K + +V+FI   A + LF
Sbjct: 334 VQKASYEKLSPVVLFIQVAADTVLF 358


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 209 LYHSEHFHIYSPFKP 165
           +YH E+F  Y P  P
Sbjct: 223 IYHQENFENYEPKSP 237


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 248 DGGHIERKTKLLFLYHSEHFHIYSPFKPSLD 156
           DGG   +K  +   ++  HF +  P K  L+
Sbjct: 243 DGGADPQKVTIGIAFYGHHFILSDPSKHGLN 273


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 368 VLIDLYR*LVDQAGFVLPQSINXRPNLFI 282
           V+IDL+       GFV+   I  R +L+I
Sbjct: 227 VIIDLFAIAAQATGFVVWPIIEQRADLWI 255


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 368 VLIDLYR*LVDQAGFVLPQSINXRPNLFI 282
           V+IDL+       GFV+   I  R +L+I
Sbjct: 227 VIIDLFAIAAQATGFVVWPIIEQRADLWI 255


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 368 VLIDLYR*LVDQAGFVLPQSINXRPNLFI 282
           V+IDL+       GFV+   I  R +L+I
Sbjct: 227 VIIDLFAIAAQATGFVVWPIIEQRADLWI 255


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 368 VLIDLYR*LVDQAGFVLPQSINXRPNLFI 282
           V+IDL+       GFV+   I  R +L+I
Sbjct: 227 VIIDLFAIAAQATGFVVWPIIEQRADLWI 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,481
Number of Sequences: 336
Number of extensions: 2493
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)