Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060627.seq
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    53   2e-09
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   3.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   6.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
 Frame = +3

Query: 297 SQTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHT 464
           +QTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F + 
Sbjct: 202 AQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYN 261

Query: 465 SYVRNTCVFGGAPKRSKPG 521
           S V+   ++GG     + G
Sbjct: 262 STVKVAVIYGGTSTNHQRG 280



 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ  A
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYA 188



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 533 GVXIVIATPGSLIGFLGK 586
           G  I++ATPG L  F+ +
Sbjct: 285 GCHILVATPGRLKDFVNR 302


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 363 VGYLCAQLLARCRPTFCRN 307
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 323 GLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVSXTNSASCCRF-WTHILCS*HVCVW 493
           G  LA N  +     YS   W+D  G G ++           +F +T+ LC   VC++
Sbjct: 113 GRFLAPNLTYLLVALYSGYVWTDILGFGYFREYLAEAVQLYFQFYYTYFLCV-IVCIF 169


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   TRRRPDWDSVSLQPFNKNFYDPHPTVLKRSP 97
           +R+R + DSVS  P  K   D  P VL + P
Sbjct: 248 SRKRSNDDSVSQPPNRKPRTDFKPQVLPQWP 278


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 216 RQWVTKNRRPFKLR 257
           R+WV+   RPF++R
Sbjct: 475 RRWVSAMSRPFEVR 488


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,448
Number of Sequences: 336
Number of extensions: 3537
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)